Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02229 ATGTTACAAAAGCCTGCATCAACAACATCATTGTTACTAGCCGCCTCAAGGAGGGTTTACAACTACCATCTTTCTACATATAGACTCATGGCATCCTCGGCTGCGGACTGCAGTTTATTGGTTCTATGCGGCAAATCACTCACCGAGAATGAAACTGCTAAAGCTATTAAGGCCAATAACACCCTCAAGATCTCTGACAAGGGAGAATTGTCCATTATTTTGCATTCAGAAGTCAATAAAAATGATATGCAACAACAGTCCTTCCAATTTACTTCCTTCATGAACTCTCTTTCCACCAATCAATATGGCAGGTTTCTCATATGGTCTCCACAGTTATCTTCAACACATGATGTCATATCACAGAACTTTTGTGAACTTCCGGTTGGTACAGTTTGTGTTGCTGATATTCAGAACAAAGGACGAGGTCGGTCAAAGAATGTTTGGGAGTCTCCATTAGGTTGCCTCATGTTTTCTTTTACTTTGCAAATGGAGGATGGACGGGTCGTTCCTTTAGTTCAGTATGTTGTTTCCCTGGCTATCACAGAGGCAATCAAGGATATCTGTGACAAAAATGGATTACCATGCATTGATGTTAAAATCAAGTGGCCAAATGATCTATACTTAAATGGATTTAAAGTTGGAGGCATTTTGTGCACCTCAACATATAAATCAAAGAAGTTCAATATCAGTGCAGGAATAGGATTGAATGTCAATAATGAGAAGCCAACAACATCCTTGAATACAGTTCTAAGAGAATTGTCTGTGGGAGCTTACCAATTTCAAAGAGAAGATGTTCTAGCAGCCTTTTTTAACAAGTTTGAGAAGTTTTTTTATCTATTTCAGAATCAAGGATTTCAAACCCTAGAGGAATTATATTACAAGACATGGTTGCACAGTGGACAGAGAGTTATTGTACAGGAAAAGAACGAGGACAAAGTAGTTGAACATGCGGTAACTGTTCAGGGTTTGACATCCTCGGGATATTTGTTGGCTGTCGGTGATGACAATCAAATGTGTGAGCTCCACCCTGATGGTAATAGCTTTGACTTTTTCAAAGGATTGGTCAGAAGGAAACTTGACTGA 1083 0.3924 MLQKPASTTSLLLAASRRVYNYHLSTYRLMASSAADCSLLVLCGKSLTENETAKAIKANNTLKISDKGELSIILHSEVNKNDMQQQSFQFTSFMNSLSTNQYGRFLIWSPQLSSTHDVISQNFCELPVGTVCVADIQNKGRGRSKNVWESPLGCLMFSFTLQMEDGRVVPLVQYVVSLAITEAIKDICDKNGLPCIDVKIKWPNDLYLNGFKVGGILCTSTYKSKKFNISAGIGLNVNNEKPTTSLNTVLRELSVGAYQFQREDVLAAFFNKFEKFFYLFQNQGFQTLEELYYKTWLHSGQRVIVQEKNEDKVVEHAVTVQGLTSSGYLLAVGDDNQMCELHPDGNSFDFFKGLVRRKLD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02229 360 Pfam Biotin/lipoate A/B protein ligase family 110 236 IPR004143 GO:0036211
Trre5g02229 360 SUPERFAMILY Class II aaRS and biotin synthetases 93 296 IPR045864 -
Trre5g02229 360 CDD BPL 105 280 IPR004408 GO:0004077|GO:0036211
Trre5g02229 360 PANTHER BIOTIN PROTEIN LIGASE 38 358 - -
Trre5g02229 360 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 91 281 IPR004143 GO:0036211
Trre5g02229 360 NCBIfam biotin--[acetyl-CoA-carboxylase] ligase 109 334 IPR004408 GO:0004077|GO:0036211
Trre5g02229 360 Pfam Biotin protein ligase C terminal domain 298 353 IPR003142 GO:0036211
Trre5g02229 360 Gene3D Bira Bifunctional Protein; Domain 2 94 295 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02229 Trre-Chr5 16795464 16800817 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02229 K01942 - gmx:100818402 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02229 5 16795464 16800817 Trre5g02229 5 16795464 16800817 ECH