Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02220 ATGACTTCTGAGAAAGTTGAAACAGTTGTTGCTGGAAATTACTTAGAAATGGAAAGGGAAGAACAAGGTTCTAAGTCTACTAGTAGCAAATTATCAAGACTCTTCTGGCATGGTGGATCTGTCTATGATGCTTGGTTTAGTTGTGCTTCTAATCAGGTTGCACAAGTGCTATTGACATTGCCATATTCCTTTTCACAATTAGGAATGTTATCTGGAATTCTATTTCAGATTTTTTATGGATTAATGGGAAGTTGGACTGCTTACATTATTAGTGTTCTTTATGTTGAATATAGAACTAGAAAAGAAAGAGAGAAAGTTGATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTTCTTGATGGACTTTTAGGAAAACATTGGAGGAATCTTGGTCTATTTTTCAATTGCACTTTCCTTTTGTTTGGATCAGTAATTCAGCTAATTGCTTGTGCAAGTAACATATACTACATAAATGATCATTTGGACAAGAGAACTTGGACATACATCTTTGGAGCTTGTTGTGCCACAACAGTTTTCATTCCTTCTTTCCACAATTACAGAATCTGGTCATTTTTAGGCCTAGTAATGACTACTTACACTGCATGGTATATGACCATAGCTTCCATTGCTCATGGACAGGCCGAGGATGTGAAGCACTCTGGCCCAACCAAATTGGTTCTGTACTTCACAGGAGCTACCAACATTCTCTATACCTTTGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAAAAGTTTAAGATGATATATCTAATTGCAACACTATATGTGATGACATTAACTTTGCCATCAGCAGCAGCAGTATATTGGGCATTTGGAGACAATCTTCTCACTCATTCCAATGCTCTTTCATTGCTTCCTAGGACAGGGTTTAGAGATACAGCTGTTGTTCTCATGCTCATTCATCAGTTTATTACATTTGGATTTGCTTGCACACCTTTATATTTTGTATGGGAGAAATTTCTTGGAGTGCATGAAACCAAAAGTTTGTTGAAAAGAGCATTGGTTAGGCTTCCTGTTGTGATTCCAATATGGTTCTTGGCAATAATATTTCCATTCTTTGGTCCCATTAATTCAACTGTTGGATCTCTCTTGGTTAGCTTCACTGTTTACATTATTCCTGCCTTGGCACACATGGTCACATTTGCCTCAGCACCAGCTAGAGAGAATGCTGTGGAGAGACCACCATCATTTTTAGGAGGATGGGTAGGATTGTACTCAGTGAATGTCTTTGTGGCTGTATGGGTTTTGGTGGTAGGATTTGGATTGGGAGGATGGGCAAGTATGCTTAATTTTGTACACCAAATTAAAACATTTGGTCTATTTGCTAAGTGCTATCAATGTCCCCCTCACAAGGTTTAA 1398 0.3813 MTSEKVETVVAGNYLEMEREEQGSKSTSSKLSRLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLMGSWTAYIISVLYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNLGLFFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYMTIASIAHGQAEDVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVMTLTLPSAAAVYWAFGDNLLTHSNALSLLPRTGFRDTAVVLMLIHQFITFGFACTPLYFVWEKFLGVHETKSLLKRALVRLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMVTFASAPARENAVERPPSFLGGWVGLYSVNVFVAVWVLVVGFGLGGWASMLNFVHQIKTFGLFAKCYQCPPHKV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02220 465 PANTHER OS05G0424000 PROTEIN-RELATED 43 421 - -
Trre5g02220 465 Pfam Transmembrane amino acid transporter protein 37 429 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02220 Trre-Chr5 16709575 16712713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02220 1 464 Organic Solute Cotransporters AT1G77690 86.780 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02220 K13946 - gmx:100816267 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02220 5 16709575 16712713 Trre5g02220 5 16709575 16712713 ECH