Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02180 ATGGCTTCTGCTCCTTCAAAACATTACACAGATGACATCAGCCTCCTTGTCGTCACACTCGACACCAATCCTTTCTTCTGGTCCACTTTCCCCTTCCACTTCTCTGAATTTCTCTCTCAAGTTCTCGCTTTTCTCAATTCAATACTCCTCCTCGGTCAACTCAACCAAGTTGTAGTTATTGCCACCGGATGCAATTCATGTTCCTACATTTACGATTCCTCTTCCGACAGGAACCATGCTTCCACTAATGGGACAATGCCCGCACTTTATTCCAATCTTCTTCATAATCTTGATGAATTTGTCACTAAGGATCAGCAATTGACGACGACTCATAATCCGGGAACTGTTCCTTCTTCACTGTTATCGGGAGCATTGTCCATGGCTCTCTGTTATATACAGAGAGCTTATCGTGCAGGACCAATGCATCCTCAACCTCGGATTCTATGTCTGCACGGATCTACTGATGGACCAGAACAGTACGTGGCAATCATGAATGCAATATTCTCTGCTCAGCGTTCTTCAGTTCCTGTAGATTCTTGTTATATTGGTTCAAACAATTCTGCATTCCTTCAGCAGGCTTCATACATAACTGGTGGCATATATTACAGGCCTCCCCAATTGGATGGGCTTTTTCAATATCTTTCAACGGTGTTTGCAACTGATTTGCATTCTCGTGAATATTTAAGGCTTCCTAAATCTTTGGGTGTGGATTTTCGTGCTTCGTGCTTCTGCCATAAGCAAACAATTGACATGGGCTATGTATGTTCTGTATGCTTATCCATATTCTGTGAGCATCACGACAAGTGCTCAACCTGTAGCTCTGTATTTGGCCGGGCTCAATTTGACGTTGCCTCAGCAGACAATCGGAAAAGAAAGGCTTCTTAA 885 0.4339 MASAPSKHYTDDISLLVVTLDTNPFFWSTFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIATGCNSCSYIYDSSSDRNHASTNGTMPALYSNLLHNLDEFVTKDQQLTTTHNPGTVPSSLLSGALSMALCYIQRAYRAGPMHPQPRILCLHGSTDGPEQYVAIMNAIFSAQRSSVPVDSCYIGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSREYLRLPKSLGVDFRASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCSSVFGRAQFDVASADNRKRKAS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02180 294 PANTHER TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED 9 286 IPR004600 GO:0000439|GO:0006289|GO:0006355
Trre5g02180 294 Gene3D von Willebrand factor, type A domain 10 221 IPR036465 -
Trre5g02180 294 Pfam Transcription factor Tfb4 14 272 IPR004600 GO:0000439|GO:0006289|GO:0006355
Trre5g02180 294 FunFam RNA polymerase II transcription factor B subunit 4 10 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02180 Trre-Chr5 16380868 16387311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02180 K03143 - gmx:100810574 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02180 5 16380868 16387311 Trre5g02180 5 16380868 16387311 ECH