Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02146 ATGGATTCCACTGCTGCCATTCGATCCTTTCACTATCCCATAGGCACTATATCCCATGTGCGATCCTCGATTGAGAAGGCAGCTGTAGTTCCCTGTCAGAAAGTCAGATGGAACTCTAATAATGGGCTTCTTCAACATTTGACAAATGGCGAGAAGCACATCCACTCTCACACCAGGGGGAAGAAGACACTGGTTTCATGTGCAAAAACAATTGAAGCTGTCAACACAACCAAGTCTGATGCTTCTTCGGACAGCGCTCCGCAAAACTCATTAGACAAAAAGCCATTGCAAACTGCTACTTTTCCTAATGGATTTGAGGCTTTGGTATTAGAGGTCTGTGACGAAACTGAAATTGCTGAACTGAAATTAAAGGTCGGTGAGTTTGAGATGCATCTTAAGCGAAACATTGGAGCAAACGTTGGAGCATCAAAAGCTCCATTGTCTAACATTTCACCAACTACACCACCACCTATTCCAAGTAAACCTATGTACGAATCAGCAGAGGCTACCCCAGAGCCGTTGCCACCAAAATCATCTCCAGAAAAAATCAACCCATTTGCAAATGTTTCGTCACAAAAGTCACCAAAGTTGACAGCATTGGAGGCTTCTGGTAACAATACATATGTGTTAGTACATTCTCCTACGGTCGGTTTATTCCGAAGAGGTAGAACAGTGAAAGGCAAGAGGCTTCCTCCTATCTGTAAAGAGGGTGATGTAATCAAAGAAGGGCAAGTGATTGGGTATATGGATCAGTTTGCCACTGGACTTCCCGTTAAGTCAGATGTAAGTGGAGAAGTGTTAAAGCTACTCGTTGAGGATGGAGATCTTGTTGGTTATGGAGATCCTCTTATTGCTGTCTTGCCATCTTTCCATGACATTAAGTAA 885 0.4328 MDSTAAIRSFHYPIGTISHVRSSIEKAAVVPCQKVRWNSNNGLLQHLTNGEKHIHSHTRGKKTLVSCAKTIEAVNTTKSDASSDSAPQNSLDKKPLQTATFPNGFEALVLEVCDETEIAELKLKVGEFEMHLKRNIGANVGASKAPLSNISPTTPPPIPSKPMYESAEATPEPLPPKSSPEKINPFANVSSQKSPKLTALEASGNNTYVLVHSPTVGLFRRGRTVKGKRLPPICKEGDVIKEGQVIGYMDQFATGLPVKSDVSGEVLKLLVEDGDLVGYGDPLIAVLPSFHDIK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02146 294 Pfam Biotin-requiring enzyme 225 284 IPR000089 -
Trre5g02146 294 CDD biotinyl_domain 211 286 - -
Trre5g02146 294 MobiDBLite consensus disorder prediction 142 183 - -
Trre5g02146 294 PANTHER IS A MEMBER OF THE PF|00364 BIOTIN-REQUIRING ENZYMES FAMILY-RELATED 37 294 - -
Trre5g02146 294 SUPERFAMILY Single hybrid motif 201 285 IPR011053 -
Trre5g02146 294 MobiDBLite consensus disorder prediction 76 97 - -
Trre5g02146 294 Gene3D - 207 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02146 Trre-Chr5 16106036 16112277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02146 211 288 Acyl Lipid Metabolism Gene Families AT5G15530 30.769 3.23e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02146 - - gmx:100792471 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02146 5 16106036 16112277 Trre5g02146 5 16106036 16112277 ECH