Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02130 ATGGCGAATCCATCTTCTTCCTCACCAACTCCATCTTTCGACCCAAAACAACCTTCAATTCCCATTTCATATCCAATCAAAACCCTTCAAGACCTTCAATCTCGTACCTATTTTGATTCCTTTCATTACCCTTTTAACAAATCTTCAGTTCCAATTTCTTCTTCTTCTTCTTTGCCTAATAGACGTAGATTATTGGTTTGTCATGATATGGCTGGTGGTTACTCAGATGATAAGTGGATTCAAGGTGGTACTAATCCTAATGCTTATGCTATTTGGCATTGGCATTTGATCGATGTTTTTGTTTATTTTTCTCATTCTCTTGTTACTATTCCTCCTCCTTCTTGGATTAATACTGCTCATCGTCATGGTGTTAAGGTGTTGGGGACTTTCATCACCGAATGGGATGAGGGAAAGGCTAACTGTGATATACTGCTTTCCACGAAGGAATCTGCACAAATGTATGCAGAACGTCTGGCAGAGCTTGCTGTTCATTTAGGCTTCGATGGGTGGCTAATAAATATGGAGGTAAAGTTGGATCCCGGCCAAATTACTAATTTGAAAGAGTTTGTCAACCATTTATCATTAACAATGCATTCTTCTATGCCGGGGTCATTAGTGATTTGGTATGACAGTGTTACAATTGACGGTAAACTAAATTGGCAAGATCAACTAAATGAATATAACAAGCCGTTTTTTGATATATGTGATGGAATATTCGTAAACTATACATGGAAGGAAGACTATCCAAGGCTCTCTGCTGCTGTGGCCGGTGATCGGAAGTTCGATGTATACATGGGAATTGATGTATTTGGAAGGAACACATATGGCGGTGGACAGTGGAATGCAAATGTTGCTCTAGATTTACTAAGAAAGAATGACGTCTCGGCTGCAATATTTGCTCCCGGATGGGTCTATGAGACAAATCAACCACCAAATTTTGAGACTGCTCAGAATAGTTGGTGGGGTCTTGTGGAGAAATCTTGGGGAGCACTGCGAAATTATAATGGACCACTACCGTTATATTCAAATTTCGATCAGGGACGTGGTTATCATATTTCAATTGATGGAAACAATGTATCAGATGCTACATGGTGCAACATTGCTTGCCAAGGCTTTCAGCCACTCCTTGAGCTTGCCGATCCTAGAAATCCTATTCAAGTTAGTATAGACTTGAAGGAAGCATCATATAGTGGAGGGGGGAACATTACATTCAAAGGATCTCTTGAAGAACAAACTCACTTTGAGACGAAAATTTTTCAAGGAGAATTTCTATTGAGCGAGTTGCCAATCCACTTTATTTATTCTGTGAAGTCTAATGGAAATTCTTCATTAGGACTTAAGCTTGTGTTCACTTCCAACGAAGACGAAACCTTTTCTGTACTTCTCACATCCCAGGTAGTGAATCATATCTCAAGTAAATTCAACAAAGTAATCACGACACGTGAACATAAGGGATCTTCTCCTGCATGGGTTATAAACGAAAGTGCAATTGCAATGAACGGATACACATTAACTGAAATCCATGCAGTCTGCTACAGATCAGATTCCTCATTATCAGATTGCAAAGATCGTACTCTGACTTCTCCATCGGATTATTATGCACTTCTTGGTCATCTCACAATCAAGAATTCCGACTCTAAGTCAGATTTTCCCGTTTCTTCTTCTTGGCTAGTTGACGGAAAATATATAAAATGGACATCAGGTTCCGAGGGTTCAAAGACGCTTAACATTAAACTTTCATGGACACTGAAAGATGGAAAGAATTATCTCTCTCTGAAGTACAACATTTATTTGGTGAAGTTATCAAAACAAGCCGGAGCAGGTACAACTTTAGAACCGAAAAAGGAGTACCTCGGAGTAGCACAAGTTAACTGTTTTTATGTTTCTGATCTTGAAGTTCCTTCAGATACTTCTACTCTCAAATTTATAATACAAGTGTGTAATGTGGATGGGACAATTCAGGCATTGGATGAGTCTCCATATTATGAATTGGAGGTTGAAGGTCCCTAA 2010 0.391 MANPSSSSPTPSFDPKQPSIPISYPIKTLQDLQSRTYFDSFHYPFNKSSVPISSSSSLPNRRRLLVCHDMAGGYSDDKWIQGGTNPNAYAIWHWHLIDVFVYFSHSLVTIPPPSWINTAHRHGVKVLGTFITEWDEGKANCDILLSTKESAQMYAERLAELAVHLGFDGWLINMEVKLDPGQITNLKEFVNHLSLTMHSSMPGSLVIWYDSVTIDGKLNWQDQLNEYNKPFFDICDGIFVNYTWKEDYPRLSAAVAGDRKFDVYMGIDVFGRNTYGGGQWNANVALDLLRKNDVSAAIFAPGWVYETNQPPNFETAQNSWWGLVEKSWGALRNYNGPLPLYSNFDQGRGYHISIDGNNVSDATWCNIACQGFQPLLELADPRNPIQVSIDLKEASYSGGGNITFKGSLEEQTHFETKIFQGEFLLSELPIHFIYSVKSNGNSSLGLKLVFTSNEDETFSVLLTSQVVNHISSKFNKVITTREHKGSSPAWVINESAIAMNGYTLTEIHAVCYRSDSSLSDCKDRTLTSPSDYYALLGHLTIKNSDSKSDFPVSSSWLVDGKYIKWTSGSEGSKTLNIKLSWTLKDGKNYLSLKYNIYLVKLSKQAGAGTTLEPKKEYLGVAQVNCFYVSDLEVPSDTSTLKFIIQVCNVDGTIQALDESPYYELEVEGP 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02130 669 PANTHER ENDO BETA N-ACETYLGLUCOSAMINIDASE 4 663 IPR032979 GO:0033925
Trre5g02130 669 CDD GH85_ENGase 65 375 - -
Trre5g02130 669 FunFam cytosolic endo-beta-N-acetylglucosaminidase 15 333 - -
Trre5g02130 669 Gene3D - 337 500 - -
Trre5g02130 669 Gene3D Glycosidases 15 334 - -
Trre5g02130 669 Pfam Glycosyl hydrolase family 85 74 351 IPR005201 GO:0005737|GO:0033925
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02130 Trre-Chr5 15896285 15900987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02130 17 667 Glycoside Hydrolase AT5G05460 56.818 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02130 K01227 - gmx:100804658 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02130 5 15896285 15900987 Trre5g02130 5 15896285 15900987 ECH