Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02116 ATGCTTCACTCCACTTCACTTCTTCACCATAATAACCATCGCTTCCTTTTCTCTTTCCGTTCCAAATCTTCACTTCTAGATTCACAATCACAATCTCTCTCTTTCGCTAAATCATTATCTCTTCCATCTTCATCATCATCATCATCATCGTCATCATCATGTTGCCGCGTGGCGCGTATATCTACAGAACCATTGGAGTTATCACCACCGCCACCTGGTTTCAATTTCCGCCGCGAAATTTCCAGACTCACCGAGCTACGTGACAAGCTCTCCGGATGTGATACTCTCCAAGAGAAACTTCGAATAGTTGACGCTGATTACAGAGTAAGACGTTTCTTCGGTTCCTCCTCCGGTAACCGGAATGCTGGACTAGCTAGGGTTTTATCTGCGTTACGGTTGGAATCAGATAAATTGTTCTTGATCAAGTGTTTGGTTGCTGCGGGTCAAGAGCATGTGTTGTGTTTGAGTGAAACTGTACCGGAGATGGAGTCGCCGGCTTCTGGTTCTGTGAAGAGTGCGTTTTATGCTCTGGCGAAGATGATTGAGAAATTGGAGTCCAGTAATGGAAATTCAGGTGCTGGTTTTGGGAAGACGAAGATGGGGATGGGTTTGGAGGATCATGAAATTCGGGACTTGAATAAGTTGTTACAGACGTTGGCACAAATTGAGTGCTTCTATGATTGCATTGGAGGAGTTATTGGTTATCAGATTACGGTTCTAGAACTTATTGTCCAACAATTGGTTGACCGGAAGAATACAAACTGGTCTCAGCACATGCATGAAGTGAAAGAAAGCCAAATTTTGGGAATCGATGCACCAACTGGGCTTGACCTTTCTGAAAATACAGAGTATGCATCACAAGCAGCTCTATGGGGTATAGAGGGTTTGCCAGACCTAGGTGAAATTTATCCTTTGGGAGGCTCTGCAGACAGACTTGATTTAGTTGATCCTAACACTGGTGAATGCCTGCCTGCTGCAATGCTGCCGTTTTGTGGAAGGACTTTGTTGGAAGGACTTATAAGAGATCTTCAGGCTAGAGAATTCTTGTACTTCAAGTTATATGGCAAACAATGTATCACTCCTGTTGCAATAATGACAAGTTCAGCAAAGAACAACCACAAACATATCACTTCCCTGTGCGAAAGACTCTCATGGTTTGGAAGAGGTCGATCAACTTTCCAACTTTTTGAGCAGCCTCTTGTTCCGGTTATTGGTGCAGAAGATGGGCAGTGGTTGGTCACTAAACCATTCAGTCCCTTGAGCAAGCCTGGTGGTCATGGTGTCATATGGAAACTTGCTCACGATAAAGGCATCTTCAAATGGTTTTTTTGTCAAGGAAGAAAAGGTGCAACTGTGCGCCAAGTCAGTAATGTTGTAGCAGCTACAGATGTAACCCTCCTGGCCTTAGCAGGGATCGGTTTGCGTCAAGGAAAGAAACTGGGGTTTGCATCCTGTGAGCGTGTCTCAGGTGCAACAGAAGGAATTAATGTACTTATGGAGAAGAGAAATCCAGATGGAAACTGGGAATATGGTGTTACTTGCATTGAATACACTGAATTTGACAAGTTTGGGATTACTGACGGATCTCTTGTTCCAAAAAGTTTGCAGGCAGAGTTTCCAGCCAATACAAACATCTTATATGTTGATTTACCATCTGCGGAGCTAGTTGGATCAAGTAAGAATGCGAATAGTATACCAGGAATGGTGTTAAATACAAGAAAGCCAATAGTTTATGTAGATCAGTTTGGAAGACAGTGTAGTGTCTCTGGTGGCAGACTGGAGTGCACAATGCAAAATATAGCAGACAATTATTTCAATTCATATTCAAATAGGTGCTATAATGGTGTGGAAGATAAGCTAGATACATTTATTGTATATAACGAACGGAGAAGGGTTACCTCATCTGCTAAGAAAAAAAGAAGACATGGATACAAGTCTTTACGCCAGACACCTGATGGTGCTCTATTGGATATGTTAAGAAATGCTCATGATCTTCTTTCCCCATGTGATATAAAACTTCCTGAGATTGGAGCTGATGCGAACTACGTTGATTCAGGACCACCATTTCTTATCCTTCTTCATCCTGCTCTTGGTCCACTTTGGGAAGTCACCAGACAAAAATTTTATGGTGGTTCCATATCAGAGGGCTCTGAGTTACAAGTAGAAGTTGCAGAGTTCTTTTGGAAGAATGTGCAGCTTAATGGAAGCCTGGTCATAATAGCTGAAAATGTTATGGGCACAATGAAGATTGATGAGAGTGGTGAGCCCATACTACATCATGGGCAAAGGTGCGGAAGATGTAAATTGCAGAATGTCAAGGTGTTGAACGAGGGAATTGATTGGAGGCATGGTGGAAACGTGTATTGGAAACATGACGTGCAAAGGTCCGAGGTGTTGCAGATCATACTGCATGGAAATGCTGAATTTGAAGCTACTGATGTTGTCTTACAGGGAAATCATGTATTCGAAGTTCCAGATGGCTACAAACTGAAGATAATGCCAGGAAGCACAGGTTTTGCAATCCAGTTGGATCCGATTGAACAGGAAATGATGGAGAGTGGAAGCTGGCACTGGGATTACAAGATAGAAGGTTCTCACATTAAACTAGAATTAGCAGAATCATAG 2625 0.4267 MLHSTSLLHHNNHRFLFSFRSKSSLLDSQSQSLSFAKSLSLPSSSSSSSSSSSCCRVARISTEPLELSPPPPGFNFRREISRLTELRDKLSGCDTLQEKLRIVDADYRVRRFFGSSSGNRNAGLARVLSALRLESDKLFLIKCLVAAGQEHVLCLSETVPEMESPASGSVKSAFYALAKMIEKLESSNGNSGAGFGKTKMGMGLEDHEIRDLNKLLQTLAQIECFYDCIGGVIGYQITVLELIVQQLVDRKNTNWSQHMHEVKESQILGIDAPTGLDLSENTEYASQAALWGIEGLPDLGEIYPLGGSADRLDLVDPNTGECLPAAMLPFCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHKHITSLCERLSWFGRGRSTFQLFEQPLVPVIGAEDGQWLVTKPFSPLSKPGGHGVIWKLAHDKGIFKWFFCQGRKGATVRQVSNVVAATDVTLLALAGIGLRQGKKLGFASCERVSGATEGINVLMEKRNPDGNWEYGVTCIEYTEFDKFGITDGSLVPKSLQAEFPANTNILYVDLPSAELVGSSKNANSIPGMVLNTRKPIVYVDQFGRQCSVSGGRLECTMQNIADNYFNSYSNRCYNGVEDKLDTFIVYNERRRVTSSAKKKRRHGYKSLRQTPDGALLDMLRNAHDLLSPCDIKLPEIGADANYVDSGPPFLILLHPALGPLWEVTRQKFYGGSISEGSELQVEVAEFFWKNVQLNGSLVIIAENVMGTMKIDESGEPILHHGQRCGRCKLQNVKVLNEGIDWRHGGNVYWKHDVQRSEVLQIILHGNAEFEATDVVLQGNHVFEVPDGYKLKIMPGSTGFAIQLDPIEQEMMESGSWHWDYKIEGSHIKLELAES 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02116 874 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 199 658 IPR029044 -
Trre5g02116 874 SUPERFAMILY Nucleotide-diphospho-sugar transferases 138 745 IPR029044 -
Trre5g02116 874 PANTHER UDP- GLUCOSE PYROPHOSPHORYLASE 69 801 IPR039741 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02116 Trre-Chr5 15782999 15791263 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02116 K22920 - gmx:100788781 1374.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02116 5 15782999 15791263 Trre5g02116 5 15782999 15791263 ECH