Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02075 ATGAGGATGACAGTGGAGCCAAGCTACTCTCCAAGTCCAACTCCCAAAGAAGAACTCGAATGGTTCCCACTTCCAAAACACCCTCTCTTCACCACCACCACCACCACCACCACTTCCGGCAACGTTTCCCGAAACCTACTTGCTTTTGACGAAGTTAACAACCGTCTCTATTTCTGGGACTCCAACAATAACTTCCTCCATCGTCTTTCTCTTCGCCTCGGTGATCCCGATCCTACTTCCGTTCTCGCCGCTTCTCCTTCTAAGGTTTTGCAAACGGATGTTGTACTGGATTTTGATGTGAATAAAATCTCTATCAATAGGAATGGATCAGCTATACTCCTTTTTGGTTCTGAAAGACTCTGTGTTATGTATCTCTATGGACGCACTTCCAAGAAGGATGTAAATTTGATTTGTAGGACTATTACTGTTGGTTCTCAAACACATTCCATTGGAAACAGTGATATCCCTGTATTGGAAGCATTATGGCACCCTTACAGTGACACCCATTTGGGAATTCTTTCTTCTGACTCAGTTTTTAGGCTTTTCAATCTGGCTGTGGATCCTTTGCAACCAGAGCAAGAATATTATTTACAGGCTGCAGGGTTTGGTAGATCCAAAAATTCCTCATCAATGTGTCCAGTCGGTTTTTCTTTTGGGGGAGACCACTTGTGGGACAGATTTAGTGTTTTTTTTGCATTCAGTGATGGGTCTATCTATGTAATTTGCCCTGTTGTTCCATTTGGAAGCCTCTTCATATGTGAATCGTTATTAGAAATATACAACGATGCTCATACATTTGGGCTAATGTCAGCCAACTCTGTAGCAGCTAGTAATTCACAGTTGGCAATCTCCTGGCTAGAAGCAACATTTCCTGAGTTACAGAAGCAAGAAATTGGAGACAGCCTGTCTTTGCTTAGAGCTCACGCTTATGCTGTATTTGACGCATCTCTTGTCTTGCAGGGACCTCTGCGAAGAGTAGGTCAGAGTGGAAATGAAGATTCAGTTGGTCGTAGTGCTGAATGTGAGGGTCGTGCAGTTAGTTTTCTCTACAATTCAGTCAGCAAAGACTCTATCTTGGTGACTGCCTGGAGTGGTGGGCAACTACAGATAGATGCTCTAGCTGATGAGATCCAACCTGTTTGGAGTGTTGGTAGTCCACCCCGTCTTCGTCTTGATTCCGACGACAAAATTCTTGGCCTTGCTATGATTTGTGAGTCAATTGCAAGCAGCCGTCTAGGGAAGCTTGATCACAATGCCTGGTTGGGTAATCCACCCCCTCTGCTGAGACTGGCTATTGTTGATTTGGCCCTGCCACGAAGAGCAGAAAGCAGTTATAATATTTCATTGTTCATTGATACACTTATGCCAGAGAGAATATATTCCCTCCACGATGGAGGGATCGACTCAATATTGTTGCATTTTCTTCCATTTACAAGTCAGACAAATGGAAAGGATGATACCATGAGAACACCTTCTGTGCATCCTGTTCTAAATACTTGCCAGAGTGGACGCACTTCAGAGCCTTCACTTTGCGGTTTCGTGTCATTATCCGATTCATTTGGATATTCCTGGATTGTAGCTGTTACTCTTTCTCAAGAATGTGTTGTGCTTGAGATGAAAACTTGGAACCTCTTGCTTCCGTTAAGCATTGATATGGAGAAGGAACGCCTTCAATCAGCGGGGAAATTAAATGATAGAGAGGTACAACCAATAATTAGCAAAGAACTGCTTAGTGGTCCCAAGGAGGTACTTGTGCCTTGGGCCTCTCAAAGTTTACGTTCGGTTGCAGCTGATTCAATTGAAGGCCGATCAACATTGCATCAGTATTTTAAGTTATTTCATGAAACTTACGTGGAATATGCACATAAGGTGCACCTGGAACTCAAGCATCATGCACCTCAGTTGAAGAAAATCATTAATGACCAACATACTCGATTAGGTGAAGCACAGCAGAAACTTTTGAAAGTTGAGGAGAAAGAGTCTACATTACAGAAAAGAATTGATCGTGCAATTCAAATGCACAGTTCTTTGGAAGAACGCTTACAACAATTAAGGAAATTACCTGGTGCTCACAAAAAACCACTATCCAGAGCAGAGCAACAGTTTAAGTCTGAACTTGACCACTTCAAGGAAGTTGAGTTGGATGCCTTGCATTCTTCTGTTGAGGCGGTAAGTGCAAGGCTGAGAAGGCACATGCAAGCTACAAATGCTAGTCAACAACAAAAGAAAATACCAGGGAAGAAAATTAGTGCTGGAGATGATCAGATATCAATACTCAAATCGTCGCTTGAAAAACTTTCACTTGTAAATACTGAAAATTCAAAGAAAGTTAAGCTTGTCGAGTCTACATTGATTAACACGGAAAGAATTAGCGGAGAATCAAGTCTGCCTATGCTTAAAAACTGTTAG 2409 0.4234 MRMTVEPSYSPSPTPKEELEWFPLPKHPLFTTTTTTTTSGNVSRNLLAFDEVNNRLYFWDSNNNFLHRLSLRLGDPDPTSVLAASPSKVLQTDVVLDFDVNKISINRNGSAILLFGSERLCVMYLYGRTSKKDVNLICRTITVGSQTHSIGNSDIPVLEALWHPYSDTHLGILSSDSVFRLFNLAVDPLQPEQEYYLQAAGFGRSKNSSSMCPVGFSFGGDHLWDRFSVFFAFSDGSIYVICPVVPFGSLFICESLLEIYNDAHTFGLMSANSVAASNSQLAISWLEATFPELQKQEIGDSLSLLRAHAYAVFDASLVLQGPLRRVGQSGNEDSVGRSAECEGRAVSFLYNSVSKDSILVTAWSGGQLQIDALADEIQPVWSVGSPPRLRLDSDDKILGLAMICESIASSRLGKLDHNAWLGNPPPLLRLAIVDLALPRRAESSYNISLFIDTLMPERIYSLHDGGIDSILLHFLPFTSQTNGKDDTMRTPSVHPVLNTCQSGRTSEPSLCGFVSLSDSFGYSWIVAVTLSQECVVLEMKTWNLLLPLSIDMEKERLQSAGKLNDREVQPIISKELLSGPKEVLVPWASQSLRSVAADSIEGRSTLHQYFKLFHETYVEYAHKVHLELKHHAPQLKKIINDQHTRLGEAQQKLLKVEEKESTLQKRIDRAIQMHSSLEERLQQLRKLPGAHKKPLSRAEQQFKSELDHFKEVELDALHSSVEAVSARLRRHMQATNASQQQKKIPGKKISAGDDQISILKSSLEKLSLVNTENSKKVKLVESTLINTERISGESSLPMLKNC 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02075 802 PANTHER NUCLEOPORIN NUP84-RELATED 14 788 IPR037700 GO:0000055|GO:0000056|GO:0006913|GO:0017056
Trre5g02075 802 Pfam Nuclear pore component 24 197 IPR019321 -
Trre5g02075 802 Pfam Nuclear pore component 443 780 IPR019321 -
Trre5g02075 802 Coils Coil 639 687 - -
Trre5g02075 802 SUPERFAMILY WD40 repeat-like 46 241 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02075 Trre-Chr5 15417291 15422930 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02075 K14318 - gmx:100801853 1305.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02075 5 15417291 15422930 Trre5g02075 5 15417291 15422930 ECH