Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02007 ATGATCGGAGTCGGAAAGATCAAACAGTACGGTAACGTCCTCGATAAGCCCCTTAACAAGGGCAAGACTGAGGTTAGTTTGAGTGCATTTGCGTTCTTGTTCTCCGAGCTTGTTCAGTATAATCAAACTCAGGTTGACAATATCGGCGAGCTCGAACGAAGATTGGAGGATGCTGGATATGCTGTTGGGGCTCGTGTTCTGGAACTGCTTTGCCACAGAGATAAGGGAAACAGAAGGGAGACACGATTGTTGGGTATTCTTTCTTTTGTGCACAGTACAGTGTGGAAAGTACTATTTGGAAAGGTAGCTGACTCACTGGAGAAAGGAACTGAACACGAAGATGAATATATGATCAGCGAAAAGGAACTCCTTGTAAACAAATTCATTTCTATCCCAAAGGACATGGGAACATTTAACTGCGGTGCATTTGTTGCTGGAATAGTTCGGGGTGTTTTGGATGGTGCTGGATTTCCAGCCGTCGTAACAGCTCATTTTGTGCCAATGGAAGGTCAACAACGACCTCGGACAACAATTTTGATAAAATTTGCTGAAGAGGTGTTACGTAGAGAAGCAAGATTAGGCTGA 585 0.441 MIGVGKIKQYGNVLDKPLNKGKTEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILIKFAEEVLRREARLG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02007 194 PANTHER 41-2 PROTEIN ANTIGEN-RELATED 4 193 IPR016696 GO:0030008|GO:0048193
Trre5g02007 194 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 23 192 IPR024096 -
Trre5g02007 194 FunFam Trafficking protein particle complex subunit 23 194 - -
Trre5g02007 194 PIRSF TRAPP_1_Trs31 5 194 IPR016696 GO:0030008|GO:0048193
Trre5g02007 194 Pfam Transport protein particle (TRAPP) component 30 182 IPR007194 -
Trre5g02007 194 Gene3D Trafficking protein particle complex subunit 3 23 194 - -
Trre5g02007 194 CDD TRAPPC5_Trs31 25 182 IPR016696 GO:0030008|GO:0048193
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02007 Trre-Chr5 14948574 14952034 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02007 K20280 - gmx:100527008 376.711