Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01952 ATGCATTGGTCAATAGATGTGACGTCTGCTCAGCTTCTTGTTACTGACAACGATTTTAGAGACCAAGATTTTAGAAAGCAACTTTCTGAAACTGTGAAGTCGCTTCTGGCATTAAAAGTTATTCCAATATTCAATGAGAACGATGCAGTCAGTACTAGGAAAGCTCCATACGAGGACTCTTCTGGCATATTTTGGGATAATGACAGTTTATCGGCTTTGTTGGCCTTGGAATTAAAAGCAGATCTTCTTATTTTGTTGAGTGATGTAGATGGTCTTTATAATGGCCCTCCAAGTGATCCACATTCAAAGCTTATTCACACATACATTAAGGAAAAGCATCAAAATGAAATTACTTTTGGAGACAAGTCTAGGGTTGGAAGAGGTGGAATGACTGCCAAAGTAAAAGCTTCTGTTCATGCAGCTGATGCTGGCATTCCTGTTGTCATTACCAGTGGTAATGCAGCTGAAAATCTCACTAAAATCCTTCAAGGACAACGTATCGGTACCCTCTTCCATAAAGATGCACATAAATGGGTCCCATCAAAAGAGGTTGATGTACGCGAGATGGCAGTTGCAGCTAGGGACTGTTCCAGACGGCTTCAGGCCGTATCTTCGGAAGAAAGGAAACAGATTTTGCTAAATATAGCCGATGCCTTAGAATCACGTCAGAAGGAGATCAAGATTGAAAATGAAGCTGATGTTGCTGCTGCACAAGAAGCAGGATATGAAAAATCCTTAGTTGCTAGGCTGGCTTTAAAGAATGAGAAGATTGCAGGCCTTGCCAACAACATACGAATTATTGCAAACATGGAAGATCCGATCGGTCAAGTCTTAAAACGAACTGAGCTTGCAGAGGGGTTAATTTTGGAGAAAACATCATCTCCTTTGGGAGTTCTTTTAATTGTTTTCGAGTCTCGCCCTGATGCACTAGTACAGATAGCTTCCTTGGCAATTCGAAGTGGAAATGGACTTCTGTTGAAAGGAGGCAAGGAGGCTAAGCGATCAAATGCAATTTTGCACAAAGTGATTACCGAAGCTATACCAGATACTGTTGGTTCAAAACTTATTGGACTTGTGACAACAAGAGCAGAAATACCTGAACTACTTAAGCTGGATGATGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCCGATATCAAGAGTTCCACAAAAATCCCTGTTCTTGGTCATGCTGATGGAATTTGTCACGTCTATGTTGATAAATCTGCTAATTTGGAGATGGCAAGACAGATTGTACTAGATGCAAAAACAGATTATCCAGCAGGCTGTAATGCCATGGAAACACTTCTTGTTCATAAGGACTTGGTAGAGAAAGGCTGGCTCAATAGTATTAGTGTCGACTTGCGGTCAGAAGGTGTTACATTATATGGAGGACAAAAAGCAAGTTCTCTTTTAAATATTCCACTTGCTCGTTCATTGCATCACGATGCTCATACTGATTCCATTGTCACAGAAGATCATGAAGTGGCTGATGTATTTCTTCGTCAAGTCGACAGTGCTGCTGTTTTTCACAATGCTAGTACAAGATTCAGCGATGGTGCACGATTTGGACTAGGCGCAGAGGTTGGAATAAGTACAAGCAGGATTCATGCTCGGGGTCCGGTTGGAGTTGATGGATTGTTAACAACCAGATGGATTCTCAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGCAATTAGCTACACTCACAGAGACCTAACTACTTGA 1743 0.4125 MHWSIDVTSAQLLVTDNDFRDQDFRKQLSETVKSLLALKVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLSALLALELKADLLILLSDVDGLYNGPPSDPHSKLIHTYIKEKHQNEITFGDKSRVGRGGMTAKVKASVHAADAGIPVVITSGNAAENLTKILQGQRIGTLFHKDAHKWVPSKEVDVREMAVAARDCSRRLQAVSSEERKQILLNIADALESRQKEIKIENEADVAAAQEAGYEKSLVARLALKNEKIAGLANNIRIIANMEDPIGQVLKRTELAEGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVITEAIPDTVGSKLIGLVTTRAEIPELLKLDDVIDLVIPRGSNKLVSDIKSSTKIPVLGHADGICHVYVDKSANLEMARQIVLDAKTDYPAGCNAMETLLVHKDLVEKGWLNSISVDLRSEGVTLYGGQKASSLLNIPLARSLHHDAHTDSIVTEDHEVADVFLRQVDSAAVFHNASTRFSDGARFGLGAEVGISTSRIHARGPVGVDGLLTTRWILKGSGQVVDGDKAISYTHRDLTT 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01952 580 PANTHER GLUTAMATE SEMIALDEHYDE DEHYDROGENASE 4 579 - -
Trre5g01952 580 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 447 580 IPR016162 GO:0016491
Trre5g01952 580 NCBIfam delta l-pyrroline-5-carboxylate synthetase 4 487 IPR005766 GO:0003824|GO:0006561
Trre5g01952 580 SUPERFAMILY ALDH-like 185 564 IPR016161 GO:0016491
Trre5g01952 580 PRINTS Glutamate 5-kinase family signature 66 93 IPR001057 GO:0005524|GO:0016301
Trre5g01952 580 PRINTS Glutamate 5-kinase family signature 27 48 IPR001057 GO:0005524|GO:0016301
Trre5g01952 580 PRINTS Glutamate 5-kinase family signature 125 145 IPR001057 GO:0005524|GO:0016301
Trre5g01952 580 CDD ALDH_F18-19_ProA-GPR 187 561 IPR000965 GO:0004350|GO:0006561
Trre5g01952 580 Hamap Gamma-glutamyl phosphate reductase [proA]. 185 565 IPR000965 GO:0004350|GO:0006561
Trre5g01952 580 ProSitePatterns Glutamate 5-kinase signature. 123 140 IPR019797 GO:0004349|GO:0006561
Trre5g01952 580 Pfam Aldehyde dehydrogenase family 182 449 IPR015590 GO:0016491
Trre5g01952 580 SUPERFAMILY Carbamate kinase-like 5 173 IPR036393 -
Trre5g01952 580 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 177 430 IPR016162 GO:0016491
Trre5g01952 580 Gene3D - 3 176 IPR036393 -
Trre5g01952 580 Pfam Amino acid kinase family 5 151 IPR001048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01952 Trre-Chr5 14554889 14559942 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01952 K12657 - gmx:548058 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01952 5 14554889 14559942 Trre5g01952 5 14554889 14559942 ECH