Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01948 ATGAATGGTGAAGAGTGTGAAGCATTGGAGAAATTGGTTTACATGTGGGGGTACTTACCGGGAGCTTTACCGCAAAGGACGCCGTTGTTGACTCCGGTTAGGGTTCCGGCGTCTGGTTCTAACTGGAAAGATGTTTCCGGTGGTGGTTGTGGATTTGCAATGGCTATATCTGAGCCAGGAAAGCTCATAACATGGGGATCGACGGATGATCTAGGCCAAAGCTATGTGACGTCTGGCAAGCACGGGGAAACCCCAGAGCCTTTCCCTCTTCCAAATGATGTTTCTATTGTAAAAGCTGCTGCTGCTTGGGCACATTGTGTTGCTGCAACGGATTGTGGAGAAGTTTACACATGGGGATGGAAGGAATGTATTCCTTCTGGGAAGGTATTTGGCGAAACTTTGTCAGGGGTAAGTCCTGAAAAAGATGCACAAGGAAAGCAGGGTTCATTCTTGACAGAGCAAGTGAGTCCTCGTTCTAAAGTCTCAAAATCAACAGGAGGAACTGTTTCCAGTGGAGAAATAAGTACTAAGAGAAGGAAAGTATCTTCAGCAAAGCAAGCGGCTGAAACCTCATCATCTGGTGATGATATTCTAACAGCAATGCCATGTCTTGTCACGCTTAATCCAGGGGTAAGGATAACAAGTGTTGCTGCCGGTGGGCGTCATACCCTAGTATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGCTCCAGAATACGTATGGTGTCCTCTCCTCATCTTATTCCTTGTATTGATTCCTCTTTTTATAGCAAAGATATATCAGCATCACTGTCTCAAGGAAGCATGAGTTCAGAAGGACAAAATTTTAGGATTCCTGGAAGTTGTGTAAAGGCTATTGCCTGTGGTGGTCGACATAGTGCAGTAATCACAGATGCTGGAGCTGTGCTTGCGTTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACCGATGATGAACTAAGTCCGACCTGCGTATCTTCCTTATTGGGTATTCGAATAGAGGGAGTTGCTGCAGGGCTATGGCATACTGTTTGCACATCTGCTGATGGTGACGTATATGCATTTGGTGGAAACCAGTTTGGGCAGCTGGGAACTGGTTCTGATCAAGCTGAGGTTCTACCAAGACTACTGGATTGTCAGAGCTTGGAAAATGAGAACGTAAAGAGCATATCTTGTGGGGCACGCCACACTGCTCTAGTAACAGATAATGGAAAAGTCTTCAGCTGGGGATGGAACAAGTATGGACAGCTGGGCCTTGGGGACGTGATTGACCGCAACATTCCTTCTGAAGTCACAATTGAAGGCTGTGTAGCTAAAAATGTTGCATGTGGTTGGTGGCACACTCTTCTTTTGGCCGAGTCGCCGACTTGA 1407 0.4698 MNGEECEALEKLVYMWGYLPGALPQRTPLLTPVRVPASGSNWKDVSGGGCGFAMAISEPGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPNDVSIVKAAAAWAHCVAATDCGEVYTWGWKECIPSGKVFGETLSGVSPEKDAQGKQGSFLTEQVSPRSKVSKSTGGTVSSGEISTKRRKVSSAKQAAETSSSGDDILTAMPCLVTLNPGVRITSVAAGGRHTLVLSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLIPCIDSSFYSKDISASLSQGSMSSEGQNFRIPGSCVKAIACGGRHSAVITDAGAVLAFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGSDQAEVLPRLLDCQSLENENVKSISCGARHTALVTDNGKVFSWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAESPT 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01948 468 Pfam Regulator of chromosome condensation (RCC1) repeat 213 242 - -
Trre5g01948 468 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 402 412 IPR000408 -
Trre5g01948 468 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 466 IPR000408 -
Trre5g01948 468 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 60 112 IPR000408 -
Trre5g01948 468 Pfam Regulator of chromosome condensation (RCC1) repeat 310 357 IPR000408 -
Trre5g01948 468 Pfam Regulator of chromosome condensation (RCC1) repeat 415 463 IPR000408 -
Trre5g01948 468 Pfam Regulator of chromosome condensation (RCC1) repeat 361 411 IPR000408 -
Trre5g01948 468 PRINTS Chromosome condensation regulator RCC1 signature 96 109 IPR000408 -
Trre5g01948 468 PRINTS Chromosome condensation regulator RCC1 signature 216 232 IPR000408 -
Trre5g01948 468 PRINTS Chromosome condensation regulator RCC1 signature 351 369 IPR000408 -
Trre5g01948 468 PRINTS Chromosome condensation regulator RCC1 signature 411 432 IPR000408 -
Trre5g01948 468 Gene3D - 183 273 IPR009091 -
Trre5g01948 468 MobiDBLite consensus disorder prediction 140 177 - -
Trre5g01948 468 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 310 361 IPR000408 -
Trre5g01948 468 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 216 226 IPR000408 -
Trre5g01948 468 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 362 415 IPR000408 -
Trre5g01948 468 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 39 464 - -
Trre5g01948 468 SUPERFAMILY RCC1/BLIP-II 13 466 IPR009091 -
Trre5g01948 468 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 230 309 IPR000408 -
Trre5g01948 468 Gene3D - 274 388 IPR009091 -
Trre5g01948 468 Gene3D - 8 135 IPR009091 -
Trre5g01948 468 Gene3D - 389 468 IPR009091 -
Trre5g01948 468 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 296 306 IPR000408 -
Trre5g01948 468 MobiDBLite consensus disorder prediction 135 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01948 Trre-Chr5 14521077 14527891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01948 - - gmx:100778841 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01948 5 14521077 14527891 Trre5g01948 5 14521077 14527891 ECH