Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01947 ATGGAAGAACAAAAGGGGAAATCATGGGAAGAGTGGTCATGGTCACGTTCTGTAAGCGAAACAGTAAATGGGTCACACGAATTAACGATAAAGGGTTATTCTTTAGCTAAAGGAATGGGTGCCGGAAAATACATCACCAGTGACACTTTCAGCGTCGGTGGTTACGATTGGGCTGTTTACTTCTACCCTGACGGGAAAAACCCTGAAGATAATTCTATGTATGTTTCTGTTTTCATCGCACTTGCTAGTGATGGTACTGATGTTAGAGCTTTGTTCAAGTTAACTTTACTTGATCAAACTTCAAAGGGTAATCATAAAGTTCATAGTCACTTCGATCGTCCACTTGAAAGTGGTCCTTATACTTTGAAGTACAGAGGAAGCATGTGGGGTTACAAGCGTTTTTTTAGGAGGACGTTGTTGGAAACTTCGGAGTATTTGAAGGATGATTGTCTTGTTATGCATTGTACGGTTGGTGTTGTTAAGACGCGTTTTGAAGGATCCAAAAAAGGTGTTATTGTGCCTGCCCCTGATATGGGTAGAGATTTCAAGAGTTTGTTTGAATCACAAGTTGGTTGTGACATTGTTTTTAAAGTCAAGGGTGAAAGTTTCAAGGCTCATAAGTTGATTCTTGCTGCTCGGTCGCCTGTGTTTAGAGCTCAGTTTTTTGGACTTGTTGGGGATCCTTCTTGTTTGGAGGAAGTAGTTGTGGAGGATATTGATCCCTTTATCTTCAAGGCAATGCTTCTCTTCATTTACTCGGACAAACTTCCTGACATTTATGATGTTATGGGCTCAACACCTATGTGCTCTTATACTGTCATGGTGCAGCATCTATTGGCTGCTGCTGATCTCTATAATCTCGACAGGCTAAAAACATTATGTGAATCAAGATTGTGGGAAGAAATCAATACTGAAAATGTAGCCACAACACTTGCTCTGGCTGAGCAACGTCACTGTCCACAGCTCAAGGCAATCTGTTTAAAATTTATTGCAAATCCGACAAACTTGGGAGCTGTAATGCAATCCCAAGCTTTTTTGCATTTGAAAGAGAGCTGCCCCTCAATGTTATTGGAATTGCTGGAGACATTTGCATCAGTGGATGATAACTCAGGTCAGACGCTGAGCAGGAAGAGAAGTGGCAGTAGCATATACGGGCAAGATTTAGCCGATGGAGGGGCAGCAGAATCAATTAATCCAAATGGTAGGCGTGTCAGGAGGCGGTCATAA 1227 0.4189 MEEQKGKSWEEWSWSRSVSETVNGSHELTIKGYSLAKGMGAGKYITSDTFSVGGYDWAVYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFKLTLLDQTSKGNHKVHSHFDRPLESGPYTLKYRGSMWGYKRFFRRTLLETSEYLKDDCLVMHCTVGVVKTRFEGSKKGVIVPAPDMGRDFKSLFESQVGCDIVFKVKGESFKAHKLILAARSPVFRAQFFGLVGDPSCLEEVVVEDIDPFIFKAMLLFIYSDKLPDIYDVMGSTPMCSYTVMVQHLLAAADLYNLDRLKTLCESRLWEEINTENVATTLALAEQRHCPQLKAICLKFIANPTNLGAVMQSQAFLHLKESCPSMLLELLETFASVDDNSGQTLSRKRSGSSIYGQDLADGGAAESINPNGRRVRRRS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01947 408 ProSiteProfiles MATH/TRAF domain profile. 23 157 IPR002083 GO:0005515
Trre5g01947 408 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 20 358 IPR045005 GO:0016567
Trre5g01947 408 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 22 162 IPR008974 GO:0005515
Trre5g01947 408 Pfam BTB/POZ domain 182 298 IPR000210 GO:0005515
Trre5g01947 408 SUPERFAMILY TRAF domain-like 20 159 - -
Trre5g01947 408 SMART math_3 28 140 IPR002083 GO:0005515
Trre5g01947 408 Gene3D Potassium Channel Kv1.1; Chain A 168 296 IPR011333 -
Trre5g01947 408 ProSiteProfiles BTB domain profile. 192 256 IPR000210 GO:0005515
Trre5g01947 408 FunFam BTB-POZ and math domain 1 168 296 - -
Trre5g01947 408 Gene3D - 301 382 - -
Trre5g01947 408 MobiDBLite consensus disorder prediction 369 408 - -
Trre5g01947 408 SUPERFAMILY POZ domain 175 300 IPR011333 -
Trre5g01947 408 CDD MATH 24 157 IPR002083 GO:0005515
Trre5g01947 408 CDD BTB_POZ_BPM_plant 178 298 - -
Trre5g01947 408 SMART BTB_4 192 302 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01947 Trre-Chr5 14511524 14516916 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01947 K10523 - gmx:100786636 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01947 5 14511524 14516916 Trre5g01947 5 14511524 14516916 ECH