Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01942 ATGAGTACACATAATATGTTGGGCATTGTTTTAAATGATATACTTCGGACGATCACACCCTCACAAGAAGATTGGGAGATACGGCTTGCAATTATCAATGATTTGCGAAGCACTGCTGAATCTGTGGAAAGCCTGAGAGGAGCAATTGTTGAACCATTTGGGTCATTTGTATCTAATCTCTTCACGCGATGGGGTGACTTGGATATTTCAATTGAGTTATTGAATGGTTCCCACATTGGATCTGCTGGGAGAAAACAAAAACAAACATTGCTGGTGAATTTTCTACAAGCTTTGAGAATGAGAGGTGGATGCATGAACTTCCAGCTCATCCCAAATGCAAGAGTGCCCATTTTAAAATTTAAAAGTGTCCGACAAGGCATATCTTGTGATGTTTCAATCAATAACCTGCCGGGCCTGATGAAATCTAAATTTTTGCTTTGGATCAACAAGATAGATGGCCGCTTTCATGATCTGGTTTTAGTGGTTAAGCAATGGGCCAAAGCTCATAAAATCAATAACTCTAAGACTGGAAGTTTCAACTCCTTTACGCTCAGTTTACTTGTAATCTTTCACTTGCAGACATGTGCTCCGGCAATTTTACCACCACTGAAAGATATATACCCTACCAATATGGTTGATGAGCTGAGAGGTGTTAGAGCTGATGCAGAGAATCTTATCGCACAAACCTGTGAAGCTAACATAAACAGGTTCATATCAAAGTCGAGGCCAATTAACAGAAAATCTTTACCAGAACTTTTTGTTGATTTCCTAATAAAGTTTGCTCAGATAGATTCATGGGCCGCAGAGATCGGAATTTGCACTTATACTGGAGAATGGGAACAGATAAAAAACAACATGAGATGGTTGCCCAAGACTAGTGCAATATTGGTTGAGGATCCTTTTGAGCAGCCGGAAAATTCAGCAAGATCTGTCAGCTCAGGACAACTGAAAAAGATAGCAGAAGCATTTCTAAAGACATACAGCTTACTTACATCACAAAATCAGAACCAAAGCTCTCTTCTGACCCAGTTAGCACCACCATATGTGTCGAGACTTATTGCCAGACCTGTCATTCCAAATTATAATGTCAGGCCTGCCATTCCAAATTATAATGTCAGACCTGCCATTCCAAATTACCTTGGTGGTTACTCTCTTCCAACTCAGCCACAGCCACAGGTGCACAGGGGTGTACCCCCACACCCAAGGTCACGGCAACGTTCTCAAAATGGCAAGCAAGGTGCAAGCTCCAACGGTTCCACTTCAAAGCAAGGAGCATACTCCAATGGTTCAACTTCGAAGCAAGGACCAAGCTCCAATGGTTCAACTTCAAAGCAAGGACCAAGCTCCAACGGTACAACTTCAAAGGGAGGTGCAAACTCCAATGGCTCAACGTCAAAGCAAGAAGCAAGCTTCAATGGTTCAACTTCAACGCTACCTGCGAAAGGTCGTCAAGGTCCGCAGCAGCAGGCATGGAGGCCAAAGTTCCAAATCCAATAG 1497 0.4262 MSTHNMLGIVLNDILRTITPSQEDWEIRLAIINDLRSTAESVESLRGAIVEPFGSFVSNLFTRWGDLDISIELLNGSHIGSAGRKQKQTLLVNFLQALRMRGGCMNFQLIPNARVPILKFKSVRQGISCDVSINNLPGLMKSKFLLWINKIDGRFHDLVLVVKQWAKAHKINNSKTGSFNSFTLSLLVIFHLQTCAPAILPPLKDIYPTNMVDELRGVRADAENLIAQTCEANINRFISKSRPINRKSLPELFVDFLIKFAQIDSWAAEIGICTYTGEWEQIKNNMRWLPKTSAILVEDPFEQPENSARSVSSGQLKKIAEAFLKTYSLLTSQNQNQSSLLTQLAPPYVSRLIARPVIPNYNVRPAIPNYNVRPAIPNYLGGYSLPTQPQPQVHRGVPPHPRSRQRSQNGKQGASSNGSTSKQGAYSNGSTSKQGPSSNGSTSKQGPSSNGTTSKGGANSNGSTSKQEASFNGSTSTLPAKGRQGPQQQAWRPKFQIQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01942 498 Gene3D - 152 327 - -
Trre5g01942 498 SUPERFAMILY Nucleotidyltransferase 5 147 IPR043519 -
Trre5g01942 498 CDD NT_PAP_TUTase 27 148 - -
Trre5g01942 498 MobiDBLite consensus disorder prediction 383 498 - -
Trre5g01942 498 Gene3D Beta Polymerase, domain 2 31 151 IPR043519 -
Trre5g01942 498 PANTHER POLY A POLYMERASE CID PAP -RELATED 5 451 - -
Trre5g01942 498 SUPERFAMILY PAP/OAS1 substrate-binding domain 154 337 - -
Trre5g01942 498 MobiDBLite consensus disorder prediction 402 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01942 Trre-Chr5 14471620 14477011 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01942 - - ahf:112791586 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01942 5 14471620 14477011 Trre5g01942 5 14471620 14477011 ECH