Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01918 ATGGCGAACACAGAAAGCAGTAGCAGAAGCTCAAGATGGTCCCTCAAAGGATTCACAGCTCTAGTTACTGGTGGAACTCGTGGAATCGGGCATGCTGTGGTGGAGGAACTAGCTGAGTTTGGTGCCATAGTGTACACTTGTTCTAGGAATGAAGAGGAGCTTAATAAACGCTTAAATGAGTGGAAAGATAAGGGTTTTTCGATTTATGGATCGGTTTGCGATGTGACTTCTTCTTCTCAAAGAGAAGAGCTTGTTGGAAAAGTTGCTTCTACTTTCAATGGCAAGCTCAACATACTTGTAAACAATGTTGGAACAAATGTGAGGAAGCCAACAATTGAGTATACAACAGAAGATTACTCAAAATTGTTGACAATTAACTTGGATTCTGCATACCATATAAGCAACCTAGCATATCCTCTTCTTAAACAATCTGGAAATGGAAGCATTGTGTTCATTTCCTCTGTTGCATCTCTCACAAGTGTAGGTTCTGGAACCATCTATGCAGCATGTAAAGCTGCAATCAATCAGCTGAACAAAGGTCTTGCTTGTGAATGGGCAAAAGACAATATAAGGATCAATTGTGTTGCACCTTGGTATACAAAAACACCACTTAATGAATATTTATATGCTAATAAAGATTTTGTGAATGAAGTACTATCTCGAACACCGATAAAGCGGATAGGAGAAACTCGCGAAGTGTCTGCCTTGGTGGCTTTCCTTTGCCTGCCAGCAGCTTCCTACATCACTGGACAGATTGTCACTGTTGATGGAGGATTTACTGCCAATGGATTTCAACCCAGCATGATTATAAGAAGTGATTAA 822 0.4039 MANTESSSRSSRWSLKGFTALVTGGTRGIGHAVVEELAEFGAIVYTCSRNEEELNKRLNEWKDKGFSIYGSVCDVTSSSQREELVGKVASTFNGKLNILVNNVGTNVRKPTIEYTTEDYSKLLTINLDSAYHISNLAYPLLKQSGNGSIVFISSVASLTSVGSGTIYAACKAAINQLNKGLACEWAKDNIRINCVAPWYTKTPLNEYLYANKDFVNEVLSRTPIKRIGETREVSALVAFLCLPAASYITGQIVTVDGGFTANGFQPSMIIRSD 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01918 273 FunFam Short-chain dehydrogenase reductase 4 265 - -
Trre5g01918 273 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Trre5g01918 273 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Trre5g01918 273 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Trre5g01918 273 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Trre5g01918 273 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Trre5g01918 273 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Trre5g01918 273 Pfam Enoyl-(Acyl carrier protein) reductase 26 260 - -
Trre5g01918 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 262 IPR036291 -
Trre5g01918 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Trre5g01918 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Trre5g01918 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Trre5g01918 273 Gene3D - 2 264 - -
Trre5g01918 273 PANTHER TROPINONE REDUCTASE 12 263 IPR045000 GO:0016491
Trre5g01918 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01918 Trre-Chr5 14295592 14297466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01918 5 264 Miscellaneous Gene Families AT2G29150 58.846 1.64e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01918 K08081 - gmx:100819646 402.905