Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01916 ATGGCTGCCTCAGTTTCTACTGTAGGAGCTGTCAAAACTCCCATGAGCTTGAATGGCTCAGTAGTAGCAGGACCATCAGTTTCCAATTCAGCTTTCTTCGGCACAAGCTTGAAGAAGATTGCCTCAAGAATTCCAAACTCCAAGCTTTCTTCTGGAAGCTTCAAAGTTTACGCTAAAGAGATCGATGAGTCGAAACAGACAGACGGAGACAGATGGAGAGGTTTGGCCTATGATACTTCAGATGATCAACAAGATATCACAAGAGGAAAGGGTATGGTTGATTCAGTTTTCCAAGCACCACAAGATGCTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGTACTGGACTTAGACAGTACGACTTTGACAACACAATGGATGGATTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAATTTCTTGACCTTGCCTAACATCAAGGTTCCTCTCATTCTTGGTGTCTGGGGAGGAAAAGGACAGGGAAAATCTTTCCAAGCTGAGCTTGTCTTTGCTAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGCTTGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATCAGACAGAGATACCGTGAAGCTGCTGACATAATCAGGAAGGGAAAAATGTGTTGTCTGTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTGGAACCACTCAATACACTGTCAACAACCAGATGGTTAATGCAACACTCATGAACATTGCTGATGCCCCCACAAATGTCCAACTCCCTGGTATGTACAACAAGGAAGACAACGCTCGTGTTCCCATCATTGTCACTGGTAACGATTTCTCAACACTCTATGCTCCTCTCATTCGTGATGGACGTATGGAGAAGTTCTACTGGGCTCCTACAAGGGAAGACCGTATTGGTGTCTGCACTGGAATTTTCCGCCATGACAAGATCCCAAAGGACGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCCATCGATTTCTTCGGTGCATTGAGGGCTAGAGTGTACGATGATGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGAAACCATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCACCAACCTTTGAGCAACCAGCAATGACACTAGAAAAGCTGTTGGAGTATGGTAACTTGCTTGTCCAAGAACAAGACAATGTGAAGAGAGTCCAATTGGCAGACCAGTATTTGAGTTCAGCTGCTCTTGGTGATGCTAATGCAGATGCCATTAAAACAGGAAAATTCTAA 1311 0.4439 MAASVSTVGAVKTPMSLNGSVVAGPSVSNSAFFGTSLKKIASRIPNSKLSSGSFKVYAKEIDESKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPQDAGTHYAVMSSYEYISTGLRQYDFDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRHDKIPKDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVETIGKKLVNSKEGPPTFEQPAMTLEKLLEYGNLLVQEQDNVKRVQLADQYLSSAALGDANADAIKTGKF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01916 436 Gene3D - 124 308 IPR027417 -
Trre5g01916 436 Pfam ATPase family associated with various cellular activities (AAA) 164 305 IPR003959 GO:0005524|GO:0016887
Trre5g01916 436 PANTHER - 21 426 IPR044960 -
Trre5g01916 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 333 IPR027417 -
Trre5g01916 436 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 124 308 - -
Trre5g01916 436 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 309 421 - -
Trre5g01916 436 Gene3D - 309 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01916 Trre-Chr5 14260266 14263600 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01916 - - psat:127083843 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01916 5 14260266 14263600 Trre5g01916 5 14260266 14263600 ECH