Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01911 ATGAACATTCCCTCTTCTCCACATGTTCTACTACTTGTTCCTCCTCTAACAATTATCATTCTCATAATGTTCCTTCAAATCCAAACAACTAATTCTTCTTCTCTCTCATCTAACCTACAAAAATCTTTCATATTGCCTTTAAAACTCCAAACACTCCCACATAGCACAGTTTCACTTCCAACACCTTCTTCACATAAAATCTCTTTCCACCACAATGTAACCTTAACTGTTTCACTAACACTTGGCTCACCCCCACAGAATGTTACCATGGTCCTTGACACAGGGAGTGAACTCTCATGGCTTCATTGCAAAAAGCTTCCAAATTTAACCTCCATTTTCAACCCACTCCTCTCTAAAACATATACTCCTACACCTTGTACTTCACCCGTTTGCATGACCCGAACCCGAGACTTTCCAGTACCCGTTTCATGTGACCCGAAAAAACTCTGCCATGCTACAATCTCCTACGCCGACGCCTCCTACATCGAAGGAAACCTCGCCACCGAGACATTCTTCACCGGCGGGTCAGCACAACCCGGAACCATATTCGGGTGTATGGATTCCGGGTTCAGCTCCAACACAAACGAAGACTCTAAAACAACTGGGTTAATGGGTATGAACCGTGGCTCTCTCTCATTTGTAACCCAAATGGGGTTACCAAAATTCTCGTATTGCATCTCCGGGAAAGACTCCACCGGAGTTTTGCTCTTCGGCGATGCAAATTTCAATTGGCTTGGACCATTGAAATACACTCCTCTCGTCAAAATGACAACCCCATTACCCTATTTCGATCGAGTCGCGTATACTGTTCGACTCGAGGGAATTCGGGTCGGGAATAAGCTACTTCAATTACCCAAATCAATTCTTGCACCGGATCATACCGGGGCGGGTCAAACCATGGTTGATTCGGGTACCCAATTCACTTTTCTTTTAGGACCAGTTTACACCGCTTTGCGAGAAGAATTTCTCTCTCAGACAAAAGGGGTATTGACCTTTTTGAATGACACGAATTTTGTCTTCCAAGGAGCTATGGATTTATGCTATCGTGTACCGGGTTCAAATTCGGGTCGGGTGGGTCTTCCGCCATTACCAGCAGTGACACTTATGTTTGAAGGAGCGGAAATGAGTGTTTCAGGAGAGAGATTATTGTATAGAGTTGTTGATGACGTGGCAACAAAAAAGTGGAACAATGATTTGGTGTATTGTTTCACGTTTGGGAATTCTGACTTGTTGGGAATTGAGGCTTATGTTATTGGACATTATCATCAAATGAACGTGTGGATGGAGTTTGATTTGGTCAACTCTAGAGTTGGATTTGCTGATACTAGATGTGAACTAGCAAGTCAACGTTTAGGGATTTAG 1362 0.4354 MNIPSSPHVLLLVPPLTIIILIMFLQIQTTNSSSLSSNLQKSFILPLKLQTLPHSTVSLPTPSSHKISFHHNVTLTVSLTLGSPPQNVTMVLDTGSELSWLHCKKLPNLTSIFNPLLSKTYTPTPCTSPVCMTRTRDFPVPVSCDPKKLCHATISYADASYIEGNLATETFFTGGSAQPGTIFGCMDSGFSSNTNEDSKTTGLMGMNRGSLSFVTQMGLPKFSYCISGKDSTGVLLFGDANFNWLGPLKYTPLVKMTTPLPYFDRVAYTVRLEGIRVGNKLLQLPKSILAPDHTGAGQTMVDSGTQFTFLLGPVYTALREEFLSQTKGVLTFLNDTNFVFQGAMDLCYRVPGSNSGRVGLPPLPAVTLMFEGAEMSVSGERLLYRVVDDVATKKWNNDLVYCFTFGNSDLLGIEAYVIGHYHQMNVWMEFDLVNSRVGFADTRCELASQRLGI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01911 453 ProSiteProfiles Peptidase family A1 domain profile. 75 440 IPR033121 -
Trre5g01911 453 Pfam Xylanase inhibitor C-terminal 267 440 IPR032799 -
Trre5g01911 453 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 90 101 IPR001969 GO:0004190|GO:0006508
Trre5g01911 453 PANTHER ASPARTYL PROTEASE-RELATED 19 444 IPR001461 GO:0004190|GO:0006508
Trre5g01911 453 FunFam Aspartic proteinase PCS1 66 239 - -
Trre5g01911 453 FunFam Aspartic proteinase PCS1 243 448 - -
Trre5g01911 453 Gene3D Acid Proteases 245 449 IPR021109 -
Trre5g01911 453 CDD pepsin_A_like_plant 74 444 IPR034161 -
Trre5g01911 453 Gene3D Acid Proteases 66 238 IPR021109 -
Trre5g01911 453 Pfam Xylanase inhibitor N-terminal 77 239 IPR032861 -
Trre5g01911 453 SUPERFAMILY Acid proteases 76 444 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01911 Trre-Chr5 14227762 14229123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01911 76 254 Miscellaneous Gene Families AT1G44130 30.570 9.30e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01911 - - gmx:100783835 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01911 5 14227762 14229123 Trre5g01911 5 14227762 14229123 ECH