Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01904 ATGCCTTTCATCTCCAAAATTGAGCGCCAATCCGATTACAATCGCTTCAGTTCATCCACTCCCATCGTTATTGACAATGGTGCTTCCTATTTCCGTATTGGATGGGCTGGTGAAACTGAACCTCGTGTTGTTTTCCGCAACATTGTTCAAAGACCTCGACATAAAGCCACAGGAGAAACTGTCACCATTGTTGGTGATCATGATCCAGCATTATTAAAATACTTTGATTGTACTCGCTCTGGACCACGCTCAGCATTTGACAGCGATGTTGTTTTCCAGTTTGAAATAATGGAATATATTCTGGACTTCGCTTTTGATCGGTTGGGTGCAACAGGATCAGAGATTGATCATCCTATCCTGATCACAGAATGTGTTTGCAACCCAGTTCACTCTCGAAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGTGTTCCATCTATAGCCTTTGGTGTTGATGCAGCATTCAGCTATAAATATAACCAACAACGAAGTGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTTGCTACAACCCATATGATTCCGTTTGTTGATGGAGAACCTAATTATAAAGGAAGTTGTCGTACTAATATTGGTGGATTCCACGTTACTAATTATTTAAAGCAACTTCTTTCACTTAAATATCCGTATCATTTGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACGTTGCACTGGACTATGTTTCTGAAGCTCAATTGTTTCAGAAAGGAACGAAGGAGGCTGAAGAAAAAACCAAAATGTGGCAGCTTCCATGGGTGCCACCTCCAGTTGAGGCGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAAATAAAGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGTGGCGAAGAGGTCATCAAAAATTAATGAGCTGGAAAATGAACTGCGTGGTTTGGAATTTCTTTTGAGTCAACTTGAACATTTTCAAGAGAGTGATATACCATCTTTCTTAGCAGAGACTGGCTATGTCTCTCGGCAGGAAGTAGAATCTGCCCGTAGTAAAGTTGTGCAATCCTTGAGGAAACAAAAAGGTGAACAAGCTGAAATCGAAAAACCTGATGTTCCCTCTAATGAGAAGTATACTCTTATAAACATCCCTGATGACATGCTGACGGCAGAACAGCTTGTTGAAAAGAAGAAACAGTTGGCACTCAAATCTATGTCTGATGGGAGGCAACGACAAAAACAGAAGCGCCAGGAATTGTTACAGGAAAGAGCGAGGAAAGAAAAGCTAGAAGATGAGAGACACAAGAAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAATACAAGGACCTTTTGGAGAAAATTGAGCAGCGTAAACGGCTCAAGACAAATGGAGGCTCCTCCACAAATGGAAATGGTTTGGCGGGTAGTGTTGGCCGTGGTGAGAGACTCAATGCTGCTCAAAGGGAGAGGATGCGCCTGCTGACGACTGCTGCCTTCGATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGTAAAGATAATGATGACGACGATGAGGAACCAGATGAGGATACCATAGAGCTAGCCCGCATCACTTCTAGGCTCCAGGCCTTGGATCCAAAATTTGTGCCCAAGGTAGAAGCAGGAACCTCCCAACCTGCCGAGGCGCCACGTGCTCGTCCGCTCACCAAAGAAGATTTTCAGATTGTTTTTGGGGTTGAAAGGTTCAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGTGTTGATCAAGTTGGATTAGATGAGATGGCTGGGGTCTCAATGAGAAGGTTATCATGTAAAGACGAAAAGCTTGAAGAGAGAATGACTAATTCAATACTTGTGACTGGTGGAAGTTCTCTTTTCCCTGGCATCATTGAACGCCTCGAAGCTGGAATTCGGATGATAAGACCGTGCGGTTCTCCTATAAAAATTGTTAGAGCACTTGATCCGGTAATGGATGCATGGCGTGGCGCATCTGCTTATGCATCAGCCCCAGGTTTCCACACACAAACATTCACTAGGATGGATTATTATGAAAAAGGTGAAGACTGGCTTCGTAATTATCAACTTCGATATTCATTGTAA 2160 0.4306 MPFISKIERQSDYNRFSSSTPIVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRSGPRSAFDSDVVFQFEIMEYILDFAFDRLGATGSEIDHPILITECVCNPVHSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQRSVCDKDGLAMCPGFATTHMIPFVDGEPNYKGSCRTNIGGFHVTNYLKQLLSLKYPYHLARFTWEKVEDLKMEHCYVALDYVSEAQLFQKGTKEAEEKTKMWQLPWVPPPVEAPPSEEEIARKAANKEKQGQRLREMAVAKRSSKINELENELRGLEFLLSQLEHFQESDIPSFLAETGYVSRQEVESARSKVVQSLRKQKGEQAEIEKPDVPSNEKYTLINIPDDMLTAEQLVEKKKQLALKSMSDGRQRQKQKRQELLQERARKEKLEDERHKKNPELYLEQLRAKYKDLLEKIEQRKRLKTNGGSSTNGNGLAGSVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDEEPDEDTIELARITSRLQALDPKFVPKVEAGTSQPAEAPRARPLTKEDFQIVFGVERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDEKLEERMTNSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASAYASAPGFHTQTFTRMDYYEKGEDWLRNYQLRYSL 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01904 719 SUPERFAMILY Actin-like ATPase domain 170 712 IPR043129 -
Trre5g01904 719 Gene3D Actin; Chain A, domain 4 514 608 - -
Trre5g01904 719 FunFam ARP5 actin-related protein 5 homolog 609 678 - -
Trre5g01904 719 FunFam Putative actin-related protein 5 679 707 - -
Trre5g01904 719 SUPERFAMILY Actin-like ATPase domain 18 161 IPR043129 -
Trre5g01904 719 PANTHER ACTIN 21 707 IPR004000 -
Trre5g01904 719 Gene3D - 176 202 - -
Trre5g01904 719 Gene3D - 679 707 - -
Trre5g01904 719 Gene3D - 609 678 - -
Trre5g01904 719 Gene3D - 18 171 - -
Trre5g01904 719 SMART actin_3 19 716 IPR004000 -
Trre5g01904 719 Coils Coil 445 465 - -
Trre5g01904 719 Coils Coil 405 435 - -
Trre5g01904 719 FunFam Actin-related protein 5 203 257 - -
Trre5g01904 719 Pfam Actin 584 711 IPR004000 -
Trre5g01904 719 Pfam Actin 19 268 IPR004000 -
Trre5g01904 719 MobiDBLite consensus disorder prediction 463 483 - -
Trre5g01904 719 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Trre5g01904 719 Gene3D Actin; Chain A, domain 4 203 258 - -
Trre5g01904 719 FunFam Actin-related protein 5 18 170 - -
Trre5g01904 719 Coils Coil 309 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01904 Trre-Chr5 14098233 14103581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01904 585 706 Miscellaneous Gene Families AT2G42100 33.607 3.42e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01904 K11672 - gmx:100808396 1194.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01904 5 14098233 14103581 Trre5g01904 5 14098233 14103581 ECH