Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01903 ATGGAGTCACCACAGGCAAGAAAATCTGGGATAAACCTCCCAGCTGGAATGTCAAGCATAGCATCACTACGTCTAGAAACCCTATCAACTCCACCTTCATCGGCTTCACCGCGCGCAATCTCAAACCTTTCATCATCATCATCACCTTCAAAAACTTCTACATGTAGTGATAGATTCATACCATGTAGATCATCTTCAAGGCTCCATACATTCGGCTTAATCGATAAACCATCACCGGTTAAAGAAGGGAGTAATGATGCTTATTCCAGATTGTTGAAATCTGAGCTTTTTGGATCTGATTTTGCTTCTCCTTCTTCTCCTGCAGGTCCTTCTGAGACTACGATGAGTCCTAGTAAGAATATGTTTCGGTTTAAGACTGATTGTTCTGGACCTTCTTCTCCGTTTTCGCCTTCTCCTTCGATTTTTGGACAATATTCTGGATTCTCTAATGAGTGTTCTACTCCTCCTAAGCCTCCTAGGAAAGTCCCCAAAACACCCAACAAGGTTCTGGATGCCCCTTCACTTCAGGATGACTTTTACTTGAATCTTGTGGACTGGTCTTCACAAAATACTCTAGCAGTGGGACTTGGCACTTGTGTTTATCTCTGGAGTGCTTCAAACAGTAAAGTGACTAAGTTGTGTGATTTGGGACCTTATGATGGTGTATGTTCTGTCCAGTGGACTAAGGAGGGTTCTTTCATATCCATTGGTACAAACCTTGGTCAAGTTCAGATTTGGGATGGTACGAAATGCAAGAAGGTCAGAACAATGGCAGGTCATCAAACAAGAACCGGTGTATTGGCATGGAATTCTCGCATATTGGCTTCAGGGAGTAGGGATAGGAACATACTTCAACATGACATGAGAGTTTCAAGTGACTTTATTGGCAAGCTTGTTGGTCACAAGTCTGAGGTATGTGGATTGAAATGGTCCTGTGATGACAGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTATTGGTATGGAATCAGCATTCTCAGCAACCAACTTTGAGACTCACAGAACACACTGCTGCTGTGAAAGCCATTGCTTGGTCACCTCACCAAAGCAACCTTCTTGTGTCTGGTGGTGGAACTGCCGATAGGTGTATTCGTTTCTGGAACACAACAAATGGCCACCAATTGAACTCTGTTGACACTGGAAGCCAGGTTTGTAACCTTGCTTGGAGTAAAAATGTGAATGAGCTAGTAAGTACTCATGGTTACTCACAAAATCAAATCATGGTGTGGAAATATCCATCACTAGCAAAGGTTGCAACTCTAACTGGCCACAGCATGAGAGTACTATACCTTGCAATGTCTCCTGATGGTCAGACAATAGTGACTGGTGCCGGGGATGAGACTCTGCGGTTTTGGAATGTTTTCCCATCAATGAAAACACCTGCCCCAGTTAAAGATACAGGCCTGTGGTCGCTGGGCCGCACTCAAATTCGATGA 1458 0.4383 MESPQARKSGINLPAGMSSIASLRLETLSTPPSSASPRAISNLSSSSSPSKTSTCSDRFIPCRSSSRLHTFGLIDKPSPVKEGSNDAYSRLLKSELFGSDFASPSSPAGPSETTMSPSKNMFRFKTDCSGPSSPFSPSPSIFGQYSGFSNECSTPPKPPRKVPKTPNKVLDAPSLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNLGQVQIWDGTKCKKVRTMAGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPAPVKDTGLWSLGRTQIR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01903 485 ProSitePatterns Trp-Asp (WD) repeats signature. 447 461 IPR019775 -
Trre5g01903 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 461 IPR001680 GO:0005515
Trre5g01903 485 CDD WD40 201 460 - -
Trre5g01903 485 ProSitePatterns Trp-Asp (WD) repeats signature. 362 376 IPR019775 -
Trre5g01903 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 330 - -
Trre5g01903 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 384 IPR001680 GO:0005515
Trre5g01903 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 428 461 - -
Trre5g01903 485 Pfam Eukaryotic translation initiation factor eIF2A 324 459 IPR013979 -
Trre5g01903 485 SUPERFAMILY WD40 repeat-like 160 461 IPR036322 GO:0005515
Trre5g01903 485 Gene3D - 135 462 IPR015943 GO:0005515
Trre5g01903 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 339 IPR001680 GO:0005515
Trre5g01903 485 SMART WD40_4 421 460 IPR001680 GO:0005515
Trre5g01903 485 SMART WD40_4 333 375 IPR001680 GO:0005515
Trre5g01903 485 SMART WD40_4 378 418 IPR001680 GO:0005515
Trre5g01903 485 SMART WD40_4 250 287 IPR001680 GO:0005515
Trre5g01903 485 SMART WD40_4 163 204 IPR001680 GO:0005515
Trre5g01903 485 SMART WD40_4 207 247 IPR001680 GO:0005515
Trre5g01903 485 SMART WD40_4 291 330 IPR001680 GO:0005515
Trre5g01903 485 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 44 467 IPR033010 GO:0010997|GO:0097027|GO:1904668
Trre5g01903 485 FunFam FIZZY-related 2 isoform 1 163 463 - -
Trre5g01903 485 MobiDBLite consensus disorder prediction 26 58 - -
Trre5g01903 485 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01903 Trre-Chr5 14092645 14096130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01903 295 461 Miscellaneous Gene Families AT5G08390 20.833 6.31e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01903 K03364 - gmx:547741 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01903 5 14092645 14096130 Trre5g01903 5 14092645 14096130 ECH