Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01861 ATGAAGTTCAATGCTGTAACTGCCGAAGATTGGTGGAAGTCTGTTGGAAAAACCGTCCCCGCCGTCGTGGTCCTCCGAACAACTGTTCCTCGGGCTTTCGATACTGATTCCCCTTGCGTCGGCTTCGCTACCGGCTTCGTCGTCGACAAAAGCCGTGGTTTTATTCTCACCAATCGCCATGTCGTCCGTCCTGGACCTGTTGTTGCTGAAGCTATGTTTTCGAACGGTAATGAGGTTCCGGTTCATCCTATTTACAAAGATCCAGTACATGATTTTGGGTTCTTTCGATATGATCCTTCTCGTATACAATTTCTAAACTATGAAGAGATACCTCTTGTTCCTGAAGCTGCTTGTGTTGGATTAGAAATCAGAGTGGTTGGCAGTGATAGTGGTGAGAATGAGAAGGTTTCCATATTGCCTGGTACTATTGTTCGTTTGGATAGTGATGCTCCTCAATATAAGAAGGATGGGTATAATGACTTTAACACATTCTATATTCAAGCAACATCTAGGACCAAAGTTGGATCAAGTGGTTCCCCAGTTATAGATTGGCAAGGTAGGGCGGTGGCCTTGCATGCTGGTAGCAATGTATCAAGTACATTGTCATACTTTTTACCTCTAGAACGAGTTGTGAGGGCATTAAGGTTTCTTCAAAAGGGGGATACAACTTATGTTGGTAAATGGAAGGAAGTTTCTATACCCCGTGGTACACTTCAGGTGATTTTTCTCCATAAAGGGTTTTATGAGACACATAGGCTTGGCCTCAGAAGTGAGACAGAGCAGACAGTACGACAAACTTCTTCTGCCAACGAAACTGGAATGCTTGTTGTGGAATCTGTGGTACCAGGTGGTCCTGTCGATAAACATTTGGAACCGGGTGATGTACTTGTTCGTGTCAATGGTCAAGTCACTACTCAGTTTCTGAAACTAGAGACTATACTTGATGACAATGTAAACTCAAATATTGAATTACAAATTGAAAGAGGTGGCTCGTCAAAGAGTTTAACTATATTGGTACAAGATTTGCACTCAATAACTCCCAATTATTTCCTGGAAGTAAGCGGAGCAGTAATCCATCCTCTTTCATATATGCAGGCTAGAAACTTCCGATTCCATTGTGGTCTTGTTTATGTGGCAGAACCAGGATATATGTTTTTTAAAGCAGGAGTTCCTCGCCATGCAATAATTAAGAAATTTGCTGGTGAAGAAATATCTTGCCTCTGGAAACTGATATCAGTTCTTTCTAAGCTATCATGGGGTGCTCAAGTACCATTGGAGTATATAAGCTATGTGGATATTCATCGAAGGAAGCTGGTGTTGGTGACGGTTGATCGCCATGAATGGTATGCACCTCCCCAGATATACACTCGGGACGACAGTACTGGCCTATGGAATGCTATACCTGCTTTTCAGCCTGATGTTGGAAATCTGGCCAGTTATCCAATTTCACTAACTGGTGAACATGCGTGTCGGAGAGATGTGTCTGAAGGTAATCATCAGGAGTTAGCTGATGGTGTCACTAGCATGGAAACTAATTCTGAAGATCCTTCAAAGTGTGTATCTCACGGAAATGGATCTGATGGCATCGTAATAAAACGGAGGAGAGTAGATGATTTATCAACTGATGGAAGTGTAGCTGATATTTCAGCTGCCACAGCAAATCCATTGGTCACTGAACACGTGGTTAAGTCTAGTCTTGTGATGTTGGAGGTTCAAGTTCCTCCATCTTTTATGCTTGATGATGTTCTTTCACGGCGCTCTATCGGAACTGGTGTCATAATATATTGCGCTCAAGATATGGGATTAGTTGCAGTTGACAAGAATACTGTTGCAGTACTTTCCTCTGAAGTGATGCTAACTTTTGCTGCTTTCCCAGTTCAAATTCCTGGACAGGTGGTATTTCTCCATCCTGTTCAAAATTTCGCTCTCGTATCATATAATCCATCTGCTTTGGGATCTGCTGGAGCTTCAGTGGTTCGTGCAGCAGTGTTACTTCCAGAGCCGGCATTATATCGAGGAGATTCTGTTTACCTTGTGGGCTTAACTAGAAGCCTTCAAGCAATTTCTAAGAAATTAGTTGTTACCGATTCTCGCAATGCATTAACTATAGCATCTTTAGGCTTCCCACATTACAGAGCAACCAATATGGAAGTTATTGATCTTAATACTGTTATTGGTAATTCATTTTCGGGCGTGCTAACAGATGAACAAGGAAGGGTTCAAGCTTTATGGGGAGTCTTCTCTACTCAGAAGAAAATAAACGGTATTACATCAGGATTTTCTCAGTTTTCGAAGGGGATTCCGATTTATGCTATAAGCCAGGTCCTGGACAAGATCATATCTGGTGCAAATGGGCCACATCTTCTCATAAATGGTGTCAAAAGACCAATGCCACAAGTGAGAATTTTAGAAGTTGAATTTACACCAAGATTACTTTCCATGGCTCGTAGTTTAGGACTAAGTGATTTTCGCATTAAGGCACTTGTTAACAAAGACCCACTAAGACAACAACTTTTACATGTTGAAGGTTGTTGGGCTGGATCAAAGGCTGAAAATCATTTGGAGCAAGGGGACATGGTTGTAGCAATCAATAACGAACCAGTCACATGCTTCCGTGACATTGAAAACGCTTGCCAAGCTTTAGATCAATCTAATACCAATGATGGCAAGCTTCAGATGACTGTTTTGCGACAGGGACGAGAGATTGAACTTCTTGTGGGAACAGATGTTAGGGACGGAAATGGCACAACTCGTGCAGTTAGTTGGTGTGGTTGTATAGTTCAAGATACACATTTAGCAGCACGTGCTCTTGGATTTCTTCCAGAAGAGGGTCGCGGTGTATACGTGGCAAGGTGCAATCATGGGTGTCCTGCATATAAATTTGGTCTGCTTGCTATTAAGTGGATAGTTGAAATTAATGGAAAACCAACTCCAGATCTAGATACTTTTGTTGATGTCACAAAGGAACTAGAGCATGAAGAGTTTGTTCGGGTAAAAACAATTCAACTCAATGGAAATCCACAAGTCATAGGAGTGAAGCAAGATTTGCATTACTGGCCAACATGGGAATTGAGGTTTAATCCAGACAATTCCACGTGGCATCGTACATAA 3111 0.4204 MKFNAVTAEDWWKSVGKTVPAVVVLRTTVPRAFDTDSPCVGFATGFVVDKSRGFILTNRHVVRPGPVVAEAMFSNGNEVPVHPIYKDPVHDFGFFRYDPSRIQFLNYEEIPLVPEAACVGLEIRVVGSDSGENEKVSILPGTIVRLDSDAPQYKKDGYNDFNTFYIQATSRTKVGSSGSPVIDWQGRAVALHAGSNVSSTLSYFLPLERVVRALRFLQKGDTTYVGKWKEVSIPRGTLQVIFLHKGFYETHRLGLRSETEQTVRQTSSANETGMLVVESVVPGGPVDKHLEPGDVLVRVNGQVTTQFLKLETILDDNVNSNIELQIERGGSSKSLTILVQDLHSITPNYFLEVSGAVIHPLSYMQARNFRFHCGLVYVAEPGYMFFKAGVPRHAIIKKFAGEEISCLWKLISVLSKLSWGAQVPLEYISYVDIHRRKLVLVTVDRHEWYAPPQIYTRDDSTGLWNAIPAFQPDVGNLASYPISLTGEHACRRDVSEGNHQELADGVTSMETNSEDPSKCVSHGNGSDGIVIKRRRVDDLSTDGSVADISAATANPLVTEHVVKSSLVMLEVQVPPSFMLDDVLSRRSIGTGVIIYCAQDMGLVAVDKNTVAVLSSEVMLTFAAFPVQIPGQVVFLHPVQNFALVSYNPSALGSAGASVVRAAVLLPEPALYRGDSVYLVGLTRSLQAISKKLVVTDSRNALTIASLGFPHYRATNMEVIDLNTVIGNSFSGVLTDEQGRVQALWGVFSTQKKINGITSGFSQFSKGIPIYAISQVLDKIISGANGPHLLINGVKRPMPQVRILEVEFTPRLLSMARSLGLSDFRIKALVNKDPLRQQLLHVEGCWAGSKAENHLEQGDMVVAINNEPVTCFRDIENACQALDQSNTNDGKLQMTVLRQGREIELLVGTDVRDGNGTTRAVSWCGCIVQDTHLAARALGFLPEEGRGVYVARCNHGCPAYKFGLLAIKWIVEINGKPTPDLDTFVDVTKELEHEEFVRVKTIQLNGNPQVIGVKQDLHYWPTWELRFNPDNSTWHRT 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01861 1036 Gene3D - 114 218 IPR043504 -
Trre5g01861 1036 SUPERFAMILY PDZ domain-like 944 1025 IPR036034 GO:0005515
Trre5g01861 1036 Pfam Trypsin-like peptidase domain 43 191 - -
Trre5g01861 1036 SUPERFAMILY Trypsin-like serine proteases 562 782 IPR009003 -
Trre5g01861 1036 SUPERFAMILY PDZ domain-like 275 374 IPR036034 GO:0005515
Trre5g01861 1036 Pfam PDZ domain 276 328 IPR041489 -
Trre5g01861 1036 ProSiteProfiles PDZ domain profile. 240 341 IPR001478 GO:0005515
Trre5g01861 1036 Gene3D - 919 1016 IPR036034 GO:0005515
Trre5g01861 1036 Gene3D - 812 912 IPR036034 GO:0005515
Trre5g01861 1036 Pfam Peptidase family M50 225 348 IPR008915 GO:0006508
Trre5g01861 1036 Pfam PDZ-like domain 344 417 IPR025926 -
Trre5g01861 1036 Pfam PDZ-like domain 916 992 IPR025926 -
Trre5g01861 1036 SUPERFAMILY Trypsin-like serine proteases 10 221 IPR009003 -
Trre5g01861 1036 SMART pdz_new 935 1004 IPR001478 GO:0005515
Trre5g01861 1036 SMART pdz_new 251 330 IPR001478 GO:0005515
Trre5g01861 1036 SMART pdz_new 819 899 IPR001478 GO:0005515
Trre5g01861 1036 Gene3D - 6 109 IPR043504 -
Trre5g01861 1036 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 3 1035 - -
Trre5g01861 1036 CDD PDZ_serine_protease 252 337 - -
Trre5g01861 1036 PRINTS HtrA/DegQ protease family signature 53 65 IPR001940 GO:0004252|GO:0006508
Trre5g01861 1036 PRINTS HtrA/DegQ protease family signature 289 301 IPR001940 GO:0004252|GO:0006508
Trre5g01861 1036 PRINTS HtrA/DegQ protease family signature 162 179 IPR001940 GO:0004252|GO:0006508
Trre5g01861 1036 Gene3D - 250 344 IPR036034 GO:0005515
Trre5g01861 1036 SUPERFAMILY PDZ domain-like 840 941 IPR036034 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01861 Trre-Chr5 13858291 13866366 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01861 K22686 - gmx:100777219 1528.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01861 5 13858291 13866366 Trre5g01861 5 13858291 13866366 ECH