Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01851 ATGGATGATGAAGTACGCAAGATCTTCAACAAATTCGATAAGAACGGCGACGGGAAGATCTCCCGAACGGAGCTAAAGGAAATGATGGTGGCACTCGGATCTAAGACGACTACTGAAGAAGTTAATCGTATGATGGCGGAGCTTGATCGGAACGGTGACGGTTACATTGATCTGAAGGAGTTCAGTGAATTACACACCGGCGGTGGCGATGATAAGGAGCTTCGCGAGGCGTTTGAGTTGTATGATTTGGATAAGAATGGACTGATATCGGCGAAGGAACTTCACGCGGTTATGCGGCGGTTGGGGGAGAAGTGTTCTCTCGGTGATTGCCGGAGGATGATCGGAAACGTGGATGCTGATGCTGATGGTAATGTAAATTTCGAAGAGTTTAAGAAGATGATGAGTCGCTCCTAA 414 0.4758 MDDEVRKIFNKFDKNGDGKISRTELKEMMVALGSKTTTEEVNRMMAELDRNGDGYIDLKEFSELHTGGGDDKELREAFELYDLDKNGLISAKELHAVMRRLGEKCSLGDCRRMIGNVDADADGNVNFEEFKKMMSRS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01851 137 Pfam EF-hand domain pair 4 63 IPR002048 GO:0005509
Trre5g01851 137 Pfam EF-hand domain pair 72 135 IPR002048 GO:0005509
Trre5g01851 137 CDD EFh 4 66 IPR002048 GO:0005509
Trre5g01851 137 ProSiteProfiles EF-hand calcium-binding domain profile. 36 64 IPR002048 GO:0005509
Trre5g01851 137 SUPERFAMILY EF-hand 3 136 IPR011992 -
Trre5g01851 137 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Trre5g01851 137 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 73 135 - -
Trre5g01851 137 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Trre5g01851 137 SMART efh_1 4 32 IPR002048 GO:0005509
Trre5g01851 137 SMART efh_1 109 137 IPR002048 GO:0005509
Trre5g01851 137 SMART efh_1 40 68 IPR002048 GO:0005509
Trre5g01851 137 SMART efh_1 73 101 IPR002048 GO:0005509
Trre5g01851 137 FunFam Probable calcium-binding protein CML27 68 137 - -
Trre5g01851 137 FunFam Calmodulin 1 1 67 - -
Trre5g01851 137 Gene3D - 1 69 - -
Trre5g01851 137 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Trre5g01851 137 Gene3D - 70 137 - -
Trre5g01851 137 ProSiteProfiles EF-hand calcium-binding domain profile. 105 137 IPR002048 GO:0005509
Trre5g01851 137 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Trre5g01851 137 CDD EFh 73 135 IPR002048 GO:0005509
Trre5g01851 137 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01851 Trre-Chr5 13755319 13755732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01851 3 135 EF-hand Containing Proteins AT1G18210 57.895 2.89e-52 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01851 K13448 - gmx:100806813 249.595