Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01796 ATGGCTACTGCAGGGATTATTAACAAACCTTTTGCAATTCCTCCATACCCTGAGATGATTTTGAAAGCAATAGAAGAATTAAACGAAGAAAATGGTTCAAACAAATCCTCAATATCCAAGTACATAGAATCCACATACGGTGGCTTGCCTCAAGGACATAAGGCACTGCTCAACTTGCACCTTGCAAGAATGAGGGACAGTGGTGAGCTTGTATTTTGGAAAAACAATTACACCAAGCGTGACCCAAATGCTCCACCAAGAAGGGGCCGCGGAAGGCCACCAAAGGCCAAAGAATCTTTTTCTCTAGGTGTCGTCTACTCACCACCCAAGCCCAGAGGTTGTCCGCCAAAGGATCCTAATGATCCACCAAAGTCGCCAAAAGTTAAGGCCTTAACCGGGAGCGGAAGGCCTAGAGGTCGGCCAAGAAAAATGTCTCAGCCGACTAGAGGATTTGACGGAGCATTAAATTCGGCTGTAGGGATCGGTGGTAGTGGGAGGCGTAGGGGTAGGCCTCCAAAGATGAAGTCCGCGCCATTGACTGAAATTAGTGCTTAA 555 0.4721 MATAGIINKPFAIPPYPEMILKAIEELNEENGSNKSSISKYIESTYGGLPQGHKALLNLHLARMRDSGELVFWKNNYTKRDPNAPPRRGRGRPPKAKESFSLGVVYSPPKPRGCPPKDPNDPPKSPKVKALTGSGRPRGRPRKMSQPTRGFDGALNSAVGIGGSGRRRGRPPKMKSAPLTEISA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01796 184 Gene3D - 11 97 IPR036388 -
Trre5g01796 184 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Trre5g01796 184 PRINTS AT-hook-like domain signature 133 143 IPR017956 GO:0003677
Trre5g01796 184 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Trre5g01796 184 PANTHER HISTONE H1 14 175 - -
Trre5g01796 184 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Trre5g01796 184 SMART AT_hook_2 165 177 IPR017956 GO:0003677
Trre5g01796 184 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Trre5g01796 184 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Trre5g01796 184 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Trre5g01796 184 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre5g01796 184 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Trre5g01796 184 PRINTS High mobility group protein (HMGY) signature 124 143 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Trre5g01796 184 PRINTS High mobility group protein (HMGY) signature 111 122 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Trre5g01796 184 FunFam HMG-Y-related protein A 8 90 - -
Trre5g01796 184 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre5g01796 184 MobiDBLite consensus disorder prediction 81 95 - -
Trre5g01796 184 MobiDBLite consensus disorder prediction 77 184 - -
Trre5g01796 184 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01796 Trre-Chr5 13329777 13331078 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01796 - - gmx:100803968 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01796 5 13329777 13331078 Trre5g01796 5 13329777 13331078 ECH