Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01713 ATGAGTGAGGTATTTGATGGGTACGAGCGTCAATACTGTGAGCTATCGGCGAATATTTCGCACCAGTGCACTGCAGCTTCTGCTCTTGATGGAGAACAGAAGAAGCAGAAACTTTCTGAAATAAATGGTGGATTAGAGGATGCTGATACGTTGATTCGGAAAATGGACCTTGAGGCTAGGAGCTTGCAGCCAAGTATGAAGGCAACTCTTCTTGCCAAATTAAGGGAATATAAAGCTGATTTGAACAATTTGAAAAGTGAAGTTAAAAGAACCAAATCAGCTAATGTCAGTGTCACTGCTCGAGATGAGTTGTTGGAGTTAGGAAGGGTTGACTCATTGGCGGTATCAAATGATCAAAAGGGAAGACTTTTGATGTCTACTGAGAGATTAAATCAATCCACTGATAAGATAACAAACAGCAGAAAAACATTGCTGGAGACGGAGGAGATCGGTGCCTCTATCCTCCAAGATTTGCATCAACAACGCCAATCTCTACTCCATGCTCATAAATCGCTCCATGGAGTGGATGATAACATTAGCAAGAGCAAGAAGATTTTGGCAGCAATGTCGAAAAGGATGAGCAGGAACAAATGGATTGTTGGCTCCTTGATGGCAGCTCTGATCCTTGCAATCGTATTAATTCTATATTTTAAGTTGACACATTAG 666 0.4144 MSEVFDGYERQYCELSANISHQCTAASALDGEQKKQKLSEINGGLEDADTLIRKMDLEARSLQPSMKATLLAKLREYKADLNNLKSEVKRTKSANVSVTARDELLELGRVDSLAVSNDQKGRLLMSTERLNQSTDKITNSRKTLLETEEIGASILQDLHQQRQSLLHAHKSLHGVDDNISKSKKILAAMSKRMSRNKWIVGSLMAALILAIVLILYFKLTH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01713 221 CDD SNARE_Vti1 127 186 - -
Trre5g01713 221 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
Trre5g01713 221 Gene3D - 1 98 IPR038407 -
Trre5g01713 221 PIRSF Membrin-2 4 218 IPR027027 GO:0005484|GO:0005794|GO:0016192
Trre5g01713 221 Pfam Snare region anchored in the vesicle membrane C-terminus 128 193 - -
Trre5g01713 221 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 20 216 - -
Trre5g01713 221 FunFam Vesicle transport through interaction with t-SNAREsB 117 197 - -
Trre5g01713 221 Gene3D - 117 197 - -
Trre5g01713 221 SUPERFAMILY SNARE fusion complex 130 189 - -
Trre5g01713 221 SUPERFAMILY t-snare proteins 6 92 IPR010989 GO:0016020|GO:0016192
Trre5g01713 221 Coils Coil 67 94 - -
Trre5g01713 221 FunFam Vesicle transport through interaction with t-SNAREs homolog 1A 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01713 Trre-Chr5 12523215 12525515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01713 K08493 - gmx:100801744 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01713 5 12523215 12525515 Trre5g01713 5 12523215 12525515 ECH