Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01676 ATGGCGACGAGTATTGGGATTATGGATAGCGCTTATTTTGTCGGTAGGAATGAAATTCTGACTTGGATCAATAATCGTCTTCAACTTAATCTTTCTCGCATTGAAGAGGCTGCATCTGGTGCTGTGCAATGCCAGATGTTGGACATGACGTATCCAGGGGTTGTGCCGATGCACAAGGTGAACTTTGATGCAAAATCAGAATATGATATGATTCAAAATTACAAAGTTCTGCAAGAAGTGTTCAACAAGCTGAAAATTGAGAAGCATATTGAAGTTACCAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTACAGTGGTTGAAACGCTACTGTGATTCTGTTAATGGCGGCATTATGAATGAAAACTATAATCCTGTGGAGCGTAGGGTTAAGGGTGGGAAGGACCGAAATATTAAGGGTTTAAGGAGCTCAAAATCACTTCAATCAAATGCTATGAATAATTCTGGTTCAGGCGATGCACTCAATCTACATAGAACCTCAGGACCTAAGCACTCAAGGTCAAGTGGAGGGTCAGATGAGGCTAATTCGTCAGCAGAGATTCAGGCCTTGTCCAAGCAGGTTACTGATCTCAAACTCTCGGTGGATCTCTTGGAAAAAGAAAGAGACTTTTACTTTTCAAAACTACGGGATATAGAAATTCTTTGTCAGACATCAGAAGTGGAAAATGAACCTATTTCGGTAGCAATCAAGAAGATTTTGTATGCTGCTGATGCAAAAGAGTCTGCATTAGAGGAAGCTCAGGCTTACATAAATGAAACATTGGAAGAAGCTGTTGAAGATGAACCAGAAACTGAAACATGA 831 0.4091 MATSIGIMDSAYFVGRNEILTWINNRLQLNLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKSEYDMIQNYKVLQEVFNKLKIEKHIEVTRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRVKGGKDRNIKGLRSSKSLQSNAMNNSGSGDALNLHRTSGPKHSRSSGGSDEANSSAEIQALSKQVTDLKLSVDLLEKERDFYFSKLRDIEILCQTSEVENEPISVAIKKILYAADAKESALEEAQAYINETLEEAVEDEPETET 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01676 276 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Trre5g01676 276 Gene3D - 180 252 - -
Trre5g01676 276 MobiDBLite consensus disorder prediction 145 188 - -
Trre5g01676 276 Coils Coil 190 210 - -
Trre5g01676 276 Coils Coil 246 266 - -
Trre5g01676 276 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 182 252 IPR004953 GO:0008017
Trre5g01676 276 FunFam Microtubule-associated protein RP/EB family member 1B 188 263 - -
Trre5g01676 276 FunFam RP/EB family microtubule-associated protein 6 134 - -
Trre5g01676 276 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Trre5g01676 276 SUPERFAMILY EB1 dimerisation domain-like 189 248 IPR036133 GO:0008017
Trre5g01676 276 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 6 265 IPR027328 GO:0008017
Trre5g01676 276 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Trre5g01676 276 Gene3D - 6 134 IPR036872 -
Trre5g01676 276 MobiDBLite consensus disorder prediction 135 188 - -
Trre5g01676 276 Pfam EB1-like C-terminal motif 207 245 IPR004953 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01676 Trre-Chr5 12112346 12116639 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01676 K10436 - gmx:100809691 446.817