Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01420 ATGAAGAACACAACAAAACCCCAAAACCAAACAACAACACCATCTTCAAGATCTTCATCAGTTTCAACTCATTTACAAATGGTTGAACTCAAACACAAAATCTTAACCTCACTCTCTAAACTCTCTGACAGAGACACACACCAAATCGCTGTTGAAGATCTCGAAAAGACTATTCAATCCCTCTCATCAGACGCTATTCCAATGATCTTAAACTGTTTATACGACGCCGTTTCAGACCCTAAACCCTCAATCAAAAACGAATCCCTTCGTCTTCTCTCTTTCGTTTGCTCTTCTCACCAACACTCCGCCGCACCTCATCTCCCCAAAATCATTTCCCACATTATCAAACGTCTTAAAGATACCGATTCGGCGTCTCGAGACGCGTGTCGCGATTCCATCGGAGCGATTTCGGTGATTTACTTGAGAACAGAGAACAATGGGAGTAGTGGGAGTAATGGTTCACTTGTTGGATTGTTTGTGAAACCTTTGTTTGAGGCAATGGGGGAACAGAATAAAGCTGTTCAGGCTGGTGCTGCTGTTTGTATGTCGAAAATGGTGGAGGCTACGGCTGCTGTTAATGAAAGTGGTGGTGATGTTGCGGTTGCGGCTGTGCCGGTTGGGGCATTTCAGAAGATGTGTCCTAGGATCTGCAAGTTTATTAATAACCCTAATTTTTTGGCTAAGGCTGCTATTTTACCTGTGGTTTCTGCATTGTCTCAGGCTGGGGCAATTGCACCACAAAGCTTGGATCATTTGCTACCTAGCATTCATGATTGCCTCTCCAGTAATGATTGGGCAACACGTAAAGCAGCAGCAGAGACATTAAGTTCCTTGGCTTTGCATTCAAGCAGTTTGATTACTGATAAAACGGCACCCACAGTGGCATTGCTTGAGTCTTGTTGGTGTGACAAGATAAAACCTGTGAGGGAAAGCATGACAGAAGCATTGCAATTGTGGAAAAAAATTGCAGGGAAAGGAGATGGATCTTCTCATGATTCAAAGCCCTTGTCGTCTGATGGTGGGAATCCTGAATCAGCCGTTTTATCAGAATCAAGTGACCTTAAAAAGGCAAATTCTGATGAGAGAAAGACTGATCCATCAGTAAAGGATTTGCTAACCAGTTCTTCAAACACGGATTCAAATTCTAAGGCCAAAGCGGCTAGCAACTCAGAGAAGGCAGTTGTAATATTGAAAAAGAAACCACCTGTCTTAAATGATAAAGTACTAAACCCAGAATTTTTCCAAAACCTTGAGAAAAGGGGATCGGATGATTTACCGGTGGAAGTGGTTGTTCCTCGCAGATGCCTCAATTCTTCAAGCTCAAACAATGAGGAAGAATCAGACGCAAGTGCTAAAGATTTAAGTGAAAGAACAAATCCTGTTGGTAATGTCCCCAATGATGGCTTTCATCGAGCTGTCAATAACAAATATCATGGTTTAGAGAAAGGTAATGATGGAAATTCAAGACAAAGGAATTATGAGGACTTTGCTCATGAAAGATACTCTGAAAGGAGAATGAATTCAAAAGAACTGAGGACTAAAGCAAATGATACAAATGAAGGTTTTTCTAGAGCTGATGGTCAATCAGAAGTACCCTTATCCAATAACAGAGGAAACTTGTTGGCCATCCAGAGACAGTTAACACAGCTTGAAAGACAACAGGTTCATCTGATGAACATGCTGCAGGATTTTATGGGTGGATCTCATGATAGCATGGTGACTCTAGAGAACAGAGTACGAGGTCTTGAGAGAATTGTTGAAGACATGTTACAAGATTTATCTATATCATCAAGCCGTAGATTTGAGGGATCATCTAACCGGCCTTCTAGCAAGTATAACGGTTTTAATGATTACACCAATGCCAAGTATGGAAGAGGTGGTGATGGACGCATCCCATTTAACGAAAGGTTTACTCAAACTGATGGGAATGCTATGGGGATGAGGGGAAGAGGGCCGTCTTGGAGATCTGACATGCCCGAGGGTTTTGATTTTCCTGGGTATGGTGCTTCGAGAAATGGCCAGATTTCCTCAAGGAGGGCTTTTGGTGGTAGTTCTGTTGATGGAAGATCGCCAAAATCAGTGCATGAGAGTGATCAAGGGGGAAGCAGCAGGAGAGCTTGGGACAGAGTAGCAATGCCCATCCGGCTTGGTGAGGGGCCCTCTGCAAGAAGTGTATGGCAAGCTTCTAAAGATGAAGCTACCTTGGAAGCAATTCGAGTTGCTGGTGAGGATAATGGAACATCTAGAGCAACAAGAGTAGCAATACCTGAAATGACCGCAGAAGCTCTGGCTGATGACAGTGTTGGACAAGAGAGGGATGCAATCTGGACTTCTTGGACTAATGCATTTGATGCCCTTCAAGCAGGTGATATAGATTCAGCCTTTGCAGAGGTTTTGAGTACCGGAGATGATCGTTTGCTTGTAAAGCTAATGGATAGAACTGGCCCTGTAATTAACGAACTTTCAAATGAGACTGCATGTGAGATCTTGTATGCCATAGGACAATTCTTACTGGAGCAGGACCTGTTTAATATCTGTTTGTCTTGGATTCAACAGCTGGTGGAAGTATTATTCGAAAATGGCCCTGATACCTTTGGTGTTCCTATGGAAGTAAAGGAAGAGCTCTTGCGGAATTTACATGATGCTTCAACCGATACAGTTGAGGGCTGGGAAGGTGTTCCTCCAGATCAACTTCTATTGCAGTTGGCATCAGGATGGGAAATTGATCTACAACAGCATGACAAATAG 2748 0.4305 MKNTTKPQNQTTTPSSRSSSVSTHLQMVELKHKILTSLSKLSDRDTHQIAVEDLEKTIQSLSSDAIPMILNCLYDAVSDPKPSIKNESLRLLSFVCSSHQHSAAPHLPKIISHIIKRLKDTDSASRDACRDSIGAISVIYLRTENNGSSGSNGSLVGLFVKPLFEAMGEQNKAVQAGAAVCMSKMVEATAAVNESGGDVAVAAVPVGAFQKMCPRICKFINNPNFLAKAAILPVVSALSQAGAIAPQSLDHLLPSIHDCLSSNDWATRKAAAETLSSLALHSSSLITDKTAPTVALLESCWCDKIKPVRESMTEALQLWKKIAGKGDGSSHDSKPLSSDGGNPESAVLSESSDLKKANSDERKTDPSVKDLLTSSSNTDSNSKAKAASNSEKAVVILKKKPPVLNDKVLNPEFFQNLEKRGSDDLPVEVVVPRRCLNSSSSNNEEESDASAKDLSERTNPVGNVPNDGFHRAVNNKYHGLEKGNDGNSRQRNYEDFAHERYSERRMNSKELRTKANDTNEGFSRADGQSEVPLSNNRGNLLAIQRQLTQLERQQVHLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMLQDLSISSSRRFEGSSNRPSSKYNGFNDYTNAKYGRGGDGRIPFNERFTQTDGNAMGMRGRGPSWRSDMPEGFDFPGYGASRNGQISSRRAFGGSSVDGRSPKSVHESDQGGSSRRAWDRVAMPIRLGEGPSARSVWQASKDEATLEAIRVAGEDNGTSRATRVAIPEMTAEALADDSVGQERDAIWTSWTNAFDALQAGDIDSAFAEVLSTGDDRLLVKLMDRTGPVINELSNETACEILYAIGQFLLEQDLFNICLSWIQQLVEVLFENGPDTFGVPMEVKEELLRNLHDASTDTVEGWEGVPPDQLLLQLASGWEIDLQQHDK 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01420 915 SUPERFAMILY ARM repeat 33 855 IPR016024 -
Trre5g01420 915 MobiDBLite consensus disorder prediction 637 708 - -
Trre5g01420 915 MobiDBLite consensus disorder prediction 324 390 - -
Trre5g01420 915 Coils Coil 572 592 - -
Trre5g01420 915 Gene3D - 146 289 IPR011989 -
Trre5g01420 915 Coils Coil 533 553 - -
Trre5g01420 915 MobiDBLite consensus disorder prediction 436 472 - -
Trre5g01420 915 Coils Coil 44 64 - -
Trre5g01420 915 MobiDBLite consensus disorder prediction 369 388 - -
Trre5g01420 915 Gene3D - 29 145 IPR011989 -
Trre5g01420 915 MobiDBLite consensus disorder prediction 331 353 - -
Trre5g01420 915 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 19 883 IPR033337 GO:0005874|GO:0008017
Trre5g01420 915 MobiDBLite consensus disorder prediction 1 23 - -
Trre5g01420 915 MobiDBLite consensus disorder prediction 354 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01420 Trre-Chr5 10054149 10059612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01420 - - gmx:100804845 1346.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01420 5 10054149 10059612 Trre5g01420 5 10054149 10059612 ECH