Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01404 ATGTTTGCAGGGGAATTACAAAATACCACAGAGGAAAGTGACATAGCTAAAATGATGCAACAGTTTATTTGTAAACTACCTATTACATCTGACAAGAAAGTGATATTTCTTGAAGCAGTGAATAATATTGACAAAAATTCACCAGAGGAGAAAATTGCCAAAGAGAAAACACCATATTTGGTTGCAGCAAAACATGGCATAGTAGAAATTACGAGGAGACTTCAATCTAAACTGAAAAGTGTCATCCATGAGAGAAACTTAGACAATGAAAATGTTTTGCTTTTGGCAGTAAGGTATAGGCAACCACAAGTTGTTCAGCAGTTGCGGGATAATAAAGTATTAGACAACAAAATCTTTGAAAGCCTATGTACACAAGTGGATAAGGATGAAAACACCATGTTACACTTAGCAGCATTTGAATCACCAAGCAAAGAAACTACTTGGAAGATGGCTGGTCCTGCCATGCAAATGATGTGGGATGTCAAGTGGTATAAGTACATCCAAGGTATAGTACCAGAAAGTTTCAAACATAGAACCAACAGAGCGGACAAAACCCCAGGTGAAATCTTTAAGGAAGCACATGAAAATCTTCTAGAAAAAAGCACTGAATGGTTGAAAAGCACAGCAGAGTCATGTTCAGTTGTAGCAGCACTAATTGCAGGTCTCTCCTTTGCAACATCAGGAAGTGTCCCCGGAGGCAATAACTCTTCAGGAAAACCGGCATTAGTAGGACAACCTGCATTTGAAGGATTCGCTATATCTTCGTTAGTCGGACTTTACTTCTCGGGCCTTGCACTCATCATGTTCCTTTCTATACTCACTTCTCGAAAACAAATTGAAGATTTCAGTGGAAACTTGCCAAAGAAACTTCTTGGAGGCTTAACTTCTCTCTTCGTATCGATTGTTGCCATGTTTATTTCTTTCTGTGCTGGACATTTCTTTGTGCTCACAGATAAATATGGTAAACATGATATCTTGGTGGAGTTATATATTGTTTTTAGCCTTCCTGTCATATACTATGCAATTGTGCAACTTCCATTATATTTTGATCTTATTCAAGTTATTTGGAAGAAGGTGCCACCACCAAGTGTTAAGGGTGTTCATCTGTAG 1110 0.382 MFAGELQNTTEESDIAKMMQQFICKLPITSDKKVIFLEAVNNIDKNSPEEKIAKEKTPYLVAAKHGIVEITRRLQSKLKSVIHERNLDNENVLLLAVRYRQPQVVQQLRDNKVLDNKIFESLCTQVDKDENTMLHLAAFESPSKETTWKMAGPAMQMMWDVKWYKYIQGIVPESFKHRTNRADKTPGEIFKEAHENLLEKSTEWLKSTAESCSVVAALIAGLSFATSGSVPGGNNSSGKPALVGQPAFEGFAISSLVGLYFSGLALIMFLSILTSRKQIEDFSGNLPKKLLGGLTSLFVSIVAMFISFCAGHFFVLTDKYGKHDILVELYIVFSLPVIYYAIVQLPLYFDLIQVIWKKVPPPSVKGVHL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01404 369 Gene3D - 31 152 IPR036770 -
Trre5g01404 369 Pfam Domain of unknown function 203 315 IPR026961 -
Trre5g01404 369 PANTHER CASKIN 25 353 - -
Trre5g01404 369 SUPERFAMILY Ankyrin repeat 47 140 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01404 Trre-Chr5 9888402 9890547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01404 53 319 Miscellaneous Gene Families AT3G12360 22.150 1.22e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01404 - - tpra:123917169 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01404 5 9888402 9890547 Trre5g01404 5 9888402 9890547 ECH