Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01403 ATGAAAGATCCTTTAAACTCATACTATGGTGGTGGGGATAACTTAACAATTAACAAAGATCGAGAGGAACAAGTACAATTGTTTCAAAAAAACAGAGAGAAAAAAGATTCGCCCAAACAACAAAAAGGGGAATTACAAAATACCACAGAGGAAAGTGACATAGCTAAAATGATGCAACAGTTTATTTGTAAACTACCTATTACATCTGACAAGAAAGTGATATTTCTTGAAGCAGTGAATAATATTGACAAAAATTCACCAGAGGAGAAAATTGCCAAAGAGAAAACACCATATTTGGTTGCAGCAAAACATGGCATAGTAGAAATTACGAGGAGACTTCAATCTAAACTGAAAAGTGTCATCCATGAGAGAAACTTAGACAATGAAAATGTTTTGCTTTTGGCAGTAAGGTATAGGCAACCACAAGTTGTTCAGCAGTTGCGGGATAATAAAGTATTAGACAACAAAATCTTTGAAAGCCTATGTACACAAGTGGATAAGGATGAAAACACCATGTTACACTTAGCAGCATTTGAATCACCAAGCAAAGAAACTACTTGGAAGATGGCTGGTCCTGCCATGCAAATGATGTGGGATGTCAAGTGGTATAAGTACATCCAAGGTATAGTACCAGAAAGTTTCAAACATAGAACCAACAGAGCGGACAAAACCCCAGGTGAAATCTTTAAGGAAGCACATGAAAATCTTCTAGAAAAAAGCACTGAATGGTTGAAAAGCACAGCAGAGTCATGTTCAGTTGTAGCAGCACTAATTGCAGGTCTCTCCTTTGCAACATCAGGAAGTGTCCCCGGAGGCAATAACTCTTCAGGAAAACCGGCATTAGTAGGACAACCTGCATTTGAAGGATTCGCTATATCTTCGTTAGTCGGACTTTACTTCTCGGGCCTTGCACTCATCATGTTCCTTTCTATACTCACTTCTCGAAAACAAATTGAAGATTTCAGTGGAAACTTGCCAAAGAAACTTCTTGGAGGCTTAACTTCTCTCTTCGTATCGATTGTTGCCATGTTTATTTCTTTCTGTGCTGGACATTTCTTTGTGCTCACAGATAAATATGGTAAACATGATATCTTGGTGGAGTTATATATTGTTTTTAGCCTTCCTGTCATATACTATGCAATTGTGCAACTTCCATTATATTTTGATCTTATTCAAGTTATTTGGAAGAAGGTGCCACCACAAAGTATTAAGGGTGTTCATTTGTAG 1227 0.3741 MKDPLNSYYGGGDNLTINKDREEQVQLFQKNREKKDSPKQQKGELQNTTEESDIAKMMQQFICKLPITSDKKVIFLEAVNNIDKNSPEEKIAKEKTPYLVAAKHGIVEITRRLQSKLKSVIHERNLDNENVLLLAVRYRQPQVVQQLRDNKVLDNKIFESLCTQVDKDENTMLHLAAFESPSKETTWKMAGPAMQMMWDVKWYKYIQGIVPESFKHRTNRADKTPGEIFKEAHENLLEKSTEWLKSTAESCSVVAALIAGLSFATSGSVPGGNNSSGKPALVGQPAFEGFAISSLVGLYFSGLALIMFLSILTSRKQIEDFSGNLPKKLLGGLTSLFVSIVAMFISFCAGHFFVLTDKYGKHDILVELYIVFSLPVIYYAIVQLPLYFDLIQVIWKKVPPQSIKGVHL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01403 408 MobiDBLite consensus disorder prediction 16 41 - -
Trre5g01403 408 SUPERFAMILY Ankyrin repeat 86 179 IPR036770 -
Trre5g01403 408 PANTHER CASKIN 47 392 - -
Trre5g01403 408 MobiDBLite consensus disorder prediction 1 49 - -
Trre5g01403 408 Pfam Domain of unknown function 242 354 IPR026961 -
Trre5g01403 408 Gene3D - 15 251 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01403 Trre-Chr5 9887297 9889724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01403 95 358 Miscellaneous Gene Families AT3G12360 23.026 6.56e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01403 - - tpra:123917169 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01403 5 9887297 9889724 Trre5g01403 5 9887297 9889724 ECH