Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01401 ATGTCCATTCAAATGGATGTATCGGAGTTTCCATTTTGTAGCGAAGATAATAATGTTGATGCGGAAGATGGCTATTTCGAGGAGATAGTACTGAAAGACTCTTGGAATGAAGTTATTACTGGTTATTACCAATATGATCAACGTTTTCACAGGATAAAAGTCAAGGGGAGAGGAACCGCATTACATGTAGCAGTAAGCAATGGTATTAAAGATGCTGTGAAACAACTTGTAGAAGCAATACTATCTCCTCAGTGGGAGTGGAATGATTATGACGATGATAATGAAACTCATCCATTAAGGATGAGGGATGAAAAAGGTCGTACTCCTCTTCACATTGCAGCATATAGAGGATTCACAGATATGTGTCAATGTATAATTGGAAAAAATGGTGAAAGGAAGAATTTGGTTAGAACAGAAAATGACAATGGAGAAACACCAATTTTTTGGGCCGTGTTAGGACAACAAACAGATACTTTTGTTTACCTACGTCAATTTTTCCCAGACGATGTCTATAGTGTTATGGATAATCATCGCAAAACAATCCTTCATGTTGCCATTAGGAGAGACACCTTCGATTTGGCAAATATAATAATGCATTGCTATTCTAGTATTAGCTCTAAGAAGGACAAAGATGGTGTTATTCCTCTTCAAGAACTTGCAAGTAGGACATCAGCCTTCGACAGTGGAAATCACCTATCATGGTGGAAGCGAATAATTTCGTACTGCTGTAAGTAA 735 0.3755 MSIQMDVSEFPFCSEDNNVDAEDGYFEEIVLKDSWNEVITGYYQYDQRFHRIKVKGRGTALHVAVSNGIKDAVKQLVEAILSPQWEWNDYDDDNETHPLRMRDEKGRTPLHIAAYRGFTDMCQCIIGKNGERKNLVRTENDNGETPIFWAVLGQQTDTFVYLRQFFPDDVYSVMDNHRKTILHVAIRRDTFDLANIIMHCYSSISSKKDKDGVIPLQELASRTSAFDSGNHLSWWKRIISYCCK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01401 244 Gene3D - 33 230 IPR036770 -
Trre5g01401 244 SUPERFAMILY Ankyrin repeat 45 217 IPR036770 -
Trre5g01401 244 PANTHER NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED 53 242 - -
Trre5g01401 244 SMART ANK_2a 177 206 IPR002110 GO:0005515
Trre5g01401 244 SMART ANK_2a 56 85 IPR002110 GO:0005515
Trre5g01401 244 SMART ANK_2a 142 172 IPR002110 GO:0005515
Trre5g01401 244 SMART ANK_2a 105 135 IPR002110 GO:0005515
Trre5g01401 244 Pfam Ankyrin repeats (3 copies) 58 134 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01401 Trre-Chr5 9870086 9874158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01401 59 216 Miscellaneous Gene Families AT5G60070 27.500 9.48e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01401 - - tpra:123917169 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01401 5 9870086 9874158 Trre5g01401 5 9870086 9874158 ECH