Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre5g01395 | ATGAGAAGAAGACCTGGAATTGGAGGGTTACAAACAGCTGCTGCTGCAAGGGATCAATATAGATTATTGGGTGAGAATGTAGCAAAGATCAGAACTGATATGATGAAGGAACAGCTTTCCACTTTTCGTTCTCAGCTTGAAGATTTTGCTCGCAAGCATAAGAATGACATACGCAAGAACCCTGCATTCAGATCACAGTTTCATGAGATGTGTGCTAAAGTTGGAGTAGATCCCTTGGCCTCGAATAAAGGTTTTTGGGCAGAGCTATTGGGAATTGGTGATTTCTATTATGAACTCGGAGTGCAAATAGTTGACATCTGCTTGGCTACTAGACCCCTCAATGGTGGATTGATCAACCTGCAAGAACTCTGTAATCTCCTTCGCCAGAGACGAAAAAGTGATCGTGGAGTTGTTTCTGAGGATGATTGCCTGCGTGCTATCAGTAAGCTGAAGGTTCTAGGTAGCGGGTTTGAGGTTATTTCTGTTGGCAAGAAAAAACTTGTTCGTTCGGTTCCAACTGAGCTGAACAAAGACCACAATGAAATTCTAGAACTTGCCCAGGGTCAAGGATTTGTGACTGTTGATGAAGTAGAAAGACGGCTATCTTGGACTTCTGGTCGTGCCATTGATGCGCTTGATACATTACTTGATGAGGGACTTGCAATGATTGATGATGGGCACAAAGATGGAAAACGACGGTACTGGTTTCCTTGCGTATCACCCATTTCGTCTTTGACAGGAATTGATTCTATGTAA | 756 | 0.4312 | MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPLNGGLINLQELCNLLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVISVGKKKLVRSVPTELNKDHNEILELAQGQGFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHKDGKRRYWFPCVSPISSLTGIDSM | 251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre5g01395 | 251 | SUPERFAMILY | "Winged helix" DNA-binding domain | 24 | 174 | IPR036390 | - | |
| Trre5g01395 | 251 | Pfam | EAP30/Vps36 family | 6 | 225 | IPR040608 | - | |
| Trre5g01395 | 251 | Gene3D | - | 24 | 85 | - | - | |
| Trre5g01395 | 251 | FunFam | Vacuolar-sorting protein SNF8 | 91 | 171 | - | - | |
| Trre5g01395 | 251 | SUPERFAMILY | "Winged helix" DNA-binding domain | 175 | 238 | IPR036390 | - | |
| Trre5g01395 | 251 | FunFam | Vacuolar protein sorting-associated protein | 172 | 250 | - | - | |
| Trre5g01395 | 251 | Gene3D | - | 172 | 247 | IPR036388 | - | |
| Trre5g01395 | 251 | Gene3D | - | 91 | 171 | IPR036388 | - | |
| Trre5g01395 | 251 | PIRSF | ESCRT2_Vps22 | 1 | 244 | IPR016689 | GO:0000814|GO:0071985 | |
| Trre5g01395 | 251 | PANTHER | EAP30 SUBUNIT OF ELL COMPLEX | 1 | 240 | IPR016689 | GO:0000814|GO:0071985 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre5g01395 | Trre-Chr5 | 9819380 | 9822945 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre5g01395 | K12188 | - | cave:132176452 | 469.159 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre5g01395 | 5 | 9819380 | 9822945 | Trre5g01395 | 5 | 9819380 | 9822945 | ECH |