Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01392 ATGGGTCGCAGTAACAAGAACTCAATGACAGAAGATCACACTATTTCTTCAATGCTTTTCATCACTATGAGCATCATTGGTCTCCCAGTTGATGTTCATGTTAAAGATGGTTCTGTTTATTCTGGAATCTTCCACACTGCTTCATTTGATGCTGGTTTTGGGGTTGTATTGAAGCAAGCAAGGATGACCAAGAAGGGAAAGGGCCTCAGCAATGTTGGAAATGAAGTCGTAGTAGATACACTAGTGGTTCTAGCAGATGATCTTGTGCAAGTTGTTGCTAAGGAAGTAACGGTTACCGCGGATGGTGTTGGTGGAAAAATAACTGGTGATTGTGAGGAAGCAGTTACACTTGAGGTTTGTAGTTCTGAGAACCGTTCGGTGGATGCAGAACAGGTTAATCAATCAAGGCGAGCTGGAGATAACACCTCCAAAGGGAAACCTGATGACCGCAGGCAGAAGTTGGAATTTAACAAAAACAATGATGCAAAGATTCAAAGCCTTCATTCACGCCATGAAAGTGATACATGTCTTCGCCAAGTTAAAGCTGATAAAGCCAGTGATCAGGGTAGTGAAAGGTCTACTTCACCAGATTCTACTTGTACACATTCCACCATAAGTGAAGATCTCAAGGAGGCATCAAATAATTTTCCAGCAAAATTTATTGAAAAATCTGCTCCGAGGGGTGAAGATCATACCAGAAATGCGAAGGAATTTAAGCTCAACCCAGCTGCCAAAGTTTTCTCCCCGTCATCTGTATATCCTAACGCAGCAACTCCTGCTGTGCCAACAGCTGCAAACATGGTTTACATGCCAAATAGCTGTGCAGCTGCAAACATGGTTTACATACCAAATAACTCTCCAGCTGCAAACATGGTTTATATGCCAAATAGCTCTCCAGCTGCAAACATGGTTTACATACCAAATACCTCTCCTCCAGTACCTGTTGCAACTATTCAACCAGAAGTTGGATTCAATACTTTTGCTTCTCAACCTTCTGTGCCTGCTAAGATTTCACAGAATGGTAATTTGACAGTTGGAAATGCTGGCACTGGTTCTCAATTTTCACAACCTCTCCCGTATGCGGCACATTACACTCCAGTTTTATCTGAACCTGCTTATTTGCAACCAACAAGCTCTCCTACGGTTATGGTTGGACGATCTGGCCAGTTATTCTATGTTCAACAAGTTTCCCAAGATTTGCTTCATGGTGCATCGGCTCCATTCTCAACTCGTCCGCTGTTGAATCATGCACAATTTCCAAAGCATCACGCAGGAATACATGGTCAACCAATACCAGTTATTTTGCCCGCGGCTCTCTTAGCAAGCACGCAACAACAATTTGCAATTCAAAACCACATTCCAGTTTTGCAACCTGCCTTTTCTGCACCCCCTATTTCTGTCCCAGGACCAAATGGCTTCTATGGCAAATAA 1431 0.4298 MGRSNKNSMTEDHTISSMLFITMSIIGLPVDVHVKDGSVYSGIFHTASFDAGFGVVLKQARMTKKGKGLSNVGNEVVVDTLVVLADDLVQVVAKEVTVTADGVGGKITGDCEEAVTLEVCSSENRSVDAEQVNQSRRAGDNTSKGKPDDRRQKLEFNKNNDAKIQSLHSRHESDTCLRQVKADKASDQGSERSTSPDSTCTHSTISEDLKEASNNFPAKFIEKSAPRGEDHTRNAKEFKLNPAAKVFSPSSVYPNAATPAVPTAANMVYMPNSCAAANMVYIPNNSPAANMVYMPNSSPAANMVYIPNTSPPVPVATIQPEVGFNTFASQPSVPAKISQNGNLTVGNAGTGSQFSQPLPYAAHYTPVLSEPAYLQPTSSPTVMVGRSGQLFYVQQVSQDLLHGASAPFSTRPLLNHAQFPKHHAGIHGQPIPVILPAALLASTQQQFAIQNHIPVLQPAFSAPPISVPGPNGFYGK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01392 476 MobiDBLite consensus disorder prediction 141 190 - -
Trre5g01392 476 Pfam Ataxin 2 SM domain 17 94 IPR025852 -
Trre5g01392 476 PANTHER ATAXIN 2-RELATED 141 441 IPR045117 GO:0003723
Trre5g01392 476 MobiDBLite consensus disorder prediction 125 140 - -
Trre5g01392 476 MobiDBLite consensus disorder prediction 125 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01392 Trre-Chr5 9802525 9809630 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01392 - - psat:127084933 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01392 5 9802525 9809630 Trre5g01392 5 9802525 9809630 ECH