Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01375 ATGGCGTCTTGGTGTGCTGCAACTGCAAGGACCTTCCACATTCCACCCATCAACTCCGTCGTTATCCACCGCCGAGCTTCATGGGTCGCCGGGATCGGCGGAGCTTCAGCTGCCGGCACCGCTATGTGGCGTTCCTCTAAACGCTCTACTATGCCTTTCTTGTGCATGAGCCTTTCCACTGATAACCGGATCACCAAGGAAGCTGTTCAGACTGAAAAGGCCCCAGCGGCATTGGGGCCGTATTCTCAAGCAATCAAAGCCAACAACCTTTTATTTGTCTCCGGTGTACTTGGTCTTGTTCCCGAGACGGGGAAGTTCGTCTCGGATGATGTTGAAGATCAGACTGAGCAGGTTCTCAAAAACATGGGGGAGATCCTAAAATCTGGGGGTGCCAGCTATGCATCAGTTGTTAAGACAACAATTTTGTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATACTTTCCTTCACCTGCCCCGGCTCGCGCGACATATCAAGTAGCTGCCTTGCCGTTGGATGCCAAGATTGAAATTGAGTGCATAGCAGCACTGTGA 570 0.5053 MASWCAATARTFHIPPINSVVIHRRASWVAGIGGASAAGTAMWRSSKRSTMPFLCMSLSTDNRITKEAVQTEKAPAALGPYSQAIKANNLLFVSGVLGLVPETGKFVSDDVEDQTEQVLKNMGEILKSGGASYASVVKTTILLADLKDFKKVNEIYAKYFPSPAPARATYQVAALPLDAKIEIECIAAL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01375 189 NCBIfam Rid family detoxifying hydrolase 66 188 IPR006056 -
Trre5g01375 189 FunFam Reactive Intermediate Deaminase A, chloroplastic 63 189 - -
Trre5g01375 189 Pfam Endoribonuclease L-PSP 72 188 IPR006175 -
Trre5g01375 189 CDD YjgF_YER057c_UK114_family 81 187 - -
Trre5g01375 189 ProSitePatterns Uncharacterized protein family UPF0076 signature. 165 183 IPR019897 -
Trre5g01375 189 SUPERFAMILY YjgF-like 63 189 IPR035959 -
Trre5g01375 189 Gene3D - 60 188 IPR035959 -
Trre5g01375 189 PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA 67 188 IPR006175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01375 Trre-Chr5 9651547 9654498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01375 K09022 - gmx:100792467 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01375 5 9651547 9654498 Trre5g01375 5 9651547 9654498 ECH