Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01352 ATGGTTCAGATCGCAAAGAGGAAGAAAGGAAGGCCGTCGAAGGCGGATCTAGCTCGTCGCTCCGCCGAATCTCAAGCTTCGGCAGCGGAATCCGATTCCCGGCGAAGTCTCCGCCACAAAAACGTGAGGTACAATATAATTGATTACGACGGTGATTACATCGACGACGAAGAAGATGAGAGGAGACGCGAGAAGAAGAAGCTCAAATTGATGGCTAAGCTACACCAGGAGGAAGGGGAACAAGAGCAGCAAGAATTGGAAGATCACGCAACAATGGAGGAAGAAGAAGAGTGTGATGAAATTGAAGGTGGTGAAGAGAATGAAGAAGCTGAAGAAAAGCATGAAGAAGACAGTGTGATAAAGGGCACAAAAGTGGAATCAAAAGGGCTCCACTTTGTTTCTGTTTCAGCCAATTATCCATATGGGATTCCATTGCCTGATAGGAAGATTTTGGAATTGATCCTTGACAAGCTACAGAAGAAGGACACATATGGTGTGTTTGCGGAACCGGTTGATCCAGAAGAGCTTCCTGATTATCACGATGTGATTGAGCATCCCATGGATTTCGCCACAGTTAGGAAGAAGTTGGCAAATGGAGCTTATCCTACCTTAGAACAATTTGAGAGTGATATATTTTTAATTTGCTCAAACGCAATGCAATACAATTCACCAGAAACTGTATACCACAGACAGGCACGAACTATACAAGAACTTGGGCGGAAGAAGTTTGAGAAGTTAAGGATTAAATTTGAACGTACTCGGGTTGAGCTAAAATCAGAACAGAAAACACAGTCTAATTCTTTAGTTAAGAAGCCATTGAAAAAGCTACCAGGTTGTGCCTCACAAGAATCTGTTGGCTTTGATTTATCATACGGAGATGTACAGCCAACTTCCTATCCAATGCAAGTTGGTAGCTATGAGAGGCCTGGGAACATTGATGGTATTGTGGAGGGGAGTGCTTTCTTGATTGATTCAAATCAAGATAAAGCTGAAGATGTTTTGTCAGGGAAGAATATTCTCTCTAAGATGGGAAAGAAGTCATTTGTGCTTGAAGACAATCGTCGTTCATCTTATAATATGTCTAATCAACCAATCACTAGATCAGATTCAACATTTATGACCTTTGAGAGTGGAACGAGGCAGCTGGTTACTGTTGGTGTCCATGCTGAATATTCCTATACTAGGAGTTTGGCTCGTTTTAGTGCATCTCTAGGACCCATTGTTTGGAAAATTGCTTCCAACAGGATTCAACAGGTACTTCCTGCCGACTGTAAATTTGGTCGTGGCTGGGTTGGAGAGTACGAAGCACTTCCGGCCCCAGTACTTGTGTTTGGTAATCATCTCCAGAAAGAATCTGGTTTGATTATGAAGTTGCACGGTGACAAAAATGGTAAGGATTTAGAAGCCAAAACTGAACATCCTGTAAATGGACGGATGCTTGAGCGGAAACATTCTACAGAGTCTCCTATCAGTTGGCCTGCATCTGAAGGAAATCCTTCTATTGGTTCTGCTGGAATGAAGCCCAATACTCCTCCCAATGTCCCCAATCAGCAGAATGCCCAATCTAGGAATTTTGGCAAATCTGAGAATACTTGTTTGAATAAAGTGGAGCTGAAATCTTTACCCTCAAGTAATCAAAATAATTCAAGTCTGGTTGCAAAGTCTGCAAGTAATGCTCCTATAGCAGAGTCAAAGCACAAAGAGATGACACCTAGGAACTTGAATGCTTTGCCAGCTACAACTTTGAAGCAGCCAGATACAAATGAAGTTGTTAGTGGAGAATTGCCTGATGGAAAAGCCATGAATACAAACTTGAATAGACAGCCAACTGGTTCATCATCTGATATTACATCACACCAAACAATCAGAACAGGTCCTTTTGTTTTCCATGGGCAAAAGCAGGGTCTCACTGACCCAGTTCAGTCAATGAGAACGTTCCCAGAAGAGGCTCAAAAGCCCCAGACTTCTTCTAACCATTCACCAGTTGACGCTGTGCCAGAAATGCCATCAGCTCCATCTGGACAAAGAGATGCCTCAGGCAATGCTTCAGCGGCAGCTGCTCAGGCATGGATGTCTGCAGGGGCAGGAGGTTTTAAACTTGGACCTGAGAATACTGATTCATCCAAAAAACATATTTCTTCAGATTCTCTTCACAACTCAACGAGAGAGTTCCATCAGCATATTTCACGAATTCAGGGTGAGTTTCCTTCCGGCGGAATGTCTTCCCAGTCTAATAAGAACAATTTTCCATTTCATTCACCTAGACCTCAACCTATTCACACAAGTGCCGTTTCACAGTTTCCCAACCGACCTATGGTTTACCCTCAATCAACATCCGCAGACCAGCCTAGATTTCAAATGCAGTCCCCTTGGCGAGGTCTCAGTCCTCAAAGCCAACCGAGGCAGAAAAAGGAAACCCTTCCGCCTGACTTGAATATTGATTGTCAATCTCCAGGGTCACCTACAAAGCAATCCTCTGGTGTTGTTGATTCACAGCAACCAGACCTTGCTTTACAACTATGA 2523 0.434 MVQIAKRKKGRPSKADLARRSAESQASAAESDSRRSLRHKNVRYNIIDYDGDYIDDEEDERRREKKKLKLMAKLHQEEGEQEQQELEDHATMEEEEECDEIEGGEENEEAEEKHEEDSVIKGTKVESKGLHFVSVSANYPYGIPLPDRKILELILDKLQKKDTYGVFAEPVDPEELPDYHDVIEHPMDFATVRKKLANGAYPTLEQFESDIFLICSNAMQYNSPETVYHRQARTIQELGRKKFEKLRIKFERTRVELKSEQKTQSNSLVKKPLKKLPGCASQESVGFDLSYGDVQPTSYPMQVGSYERPGNIDGIVEGSAFLIDSNQDKAEDVLSGKNILSKMGKKSFVLEDNRRSSYNMSNQPITRSDSTFMTFESGTRQLVTVGVHAEYSYTRSLARFSASLGPIVWKIASNRIQQVLPADCKFGRGWVGEYEALPAPVLVFGNHLQKESGLIMKLHGDKNGKDLEAKTEHPVNGRMLERKHSTESPISWPASEGNPSIGSAGMKPNTPPNVPNQQNAQSRNFGKSENTCLNKVELKSLPSSNQNNSSLVAKSASNAPIAESKHKEMTPRNLNALPATTLKQPDTNEVVSGELPDGKAMNTNLNRQPTGSSSDITSHQTIRTGPFVFHGQKQGLTDPVQSMRTFPEEAQKPQTSSNHSPVDAVPEMPSAPSGQRDASGNASAAAAQAWMSAGAGGFKLGPENTDSSKKHISSDSLHNSTREFHQHISRIQGEFPSGGMSSQSNKNNFPFHSPRPQPIHTSAVSQFPNRPMVYPQSTSADQPRFQMQSPWRGLSPQSQPRQKKETLPPDLNIDCQSPGSPTKQSSGVVDSQQPDLALQL 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01352 840 Pfam Bromodomain 153 233 IPR001487 GO:0005515
Trre5g01352 840 SMART bromo_6 140 248 IPR001487 GO:0005515
Trre5g01352 840 MobiDBLite consensus disorder prediction 647 663 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 540 557 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 733 840 - -
Trre5g01352 840 SUPERFAMILY Bromodomain 136 246 IPR036427 GO:0005515
Trre5g01352 840 MobiDBLite consensus disorder prediction 87 113 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 574 588 - -
Trre5g01352 840 PANTHER BROMODOMAIN CONTAINING PROTEIN 5 839 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 72 120 - -
Trre5g01352 840 Coils Coil 54 96 - -
Trre5g01352 840 ProSiteProfiles Bromodomain profile. 159 229 IPR001487 GO:0005515
Trre5g01352 840 MobiDBLite consensus disorder prediction 813 840 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 72 86 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 647 719 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 465 485 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 1 41 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 704 719 - -
Trre5g01352 840 Gene3D - 146 268 IPR036427 GO:0005515
Trre5g01352 840 CDD Bromodomain 147 243 - -
Trre5g01352 840 ProSitePatterns Bromodomain signature. 165 221 IPR018359 -
Trre5g01352 840 MobiDBLite consensus disorder prediction 540 619 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 488 525 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 735 805 - -
Trre5g01352 840 PRINTS Bromodomain signature 162 175 IPR001487 GO:0005515
Trre5g01352 840 PRINTS Bromodomain signature 176 192 IPR001487 GO:0005515
Trre5g01352 840 PRINTS Bromodomain signature 192 210 IPR001487 GO:0005515
Trre5g01352 840 PRINTS Bromodomain signature 210 229 IPR001487 GO:0005515
Trre5g01352 840 MobiDBLite consensus disorder prediction 465 525 - -
Trre5g01352 840 MobiDBLite consensus disorder prediction 599 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01352 Trre-Chr5 9462902 9467527 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01352 K22184 - gmx:100792844 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01352 5 9462902 9467527 Trre5g01352 5 9462902 9467527 ECH