Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01267 ATGAGTGTGATTCCAAAAGAAACAATTGAAGTTATTGCACAAACCATTGGCATCACTAATTTATCTTCCGATGTTGCCCTTGCTCTTGCACCCGATCTTGAATATCGCATTCGTGAAATCATGCAGGAATCGATTAAATGTATGCGTCATGGAAGGAGAACCTTTCTTACTGCTGATGATGTTGATGCTGCACTTGCATTGAGAAATTTAGAGCCGATATATGGTTTTGCCTCTAATGATCCTCCGCGGTTCAAAAGAGCTTCTGGGCACAAGGATTTGTTCTACATTGATGACAAGGATGTGGATATTAAAGATCTGGTTGAAGCTCCTTTACCAAAAGCACCCCTTGATACATCAATTACCAGTCATTGGTTGGCTATTGAAGGTGTGCAGCCTGCAATTCCTGAAAATGCTCCATTTGAAGCTTCCTCTGAGATAAGACAAATTGAATATAAGGATGATGCGCTTCCTGTTGATGTCAAATTGCCAGTTAAACATATAATAACAACGGAGCTTCAGCTTTACTACGAAAAAATAATTGAGCTGATTTTGAATAAGCCTGGCTCCATTCCTTTTAGAAGAGCATTGGTTACCTTGGCAACTGACTCAGGACTCCATCCTTTAGTTCCTTATTTTACACGCTTTGTTGCTGATGAGGTGGCACGGAATTTAAATAATTTAAATATTTTATCTGCCTTGATGCGCCTTGTGCGGAGCCTTTTGCAAAATCCTCACATACATATAGAACTATATTTACACCAATTGATGCCGCCTATCATTACTTGCATTGTTGCAAAAAGGATTGGAAACAGACTGTCTGATAATCACTGGGAGCTTAGGGATTTTAGTGCTAATCTTGTTGCTTTGATATGCAAAAGATTTGGCCATATGTATCACAATCTTCAGCCGCGTGTGACAAAGACTTTTCTTCATTCTTTCTTGGATCCTACAAAAGCTCTACCTCAACACTATGGTGCAATTAAAGGAATAACAGCTCTTGGATCAAGACTGGTTCGCTTGCTTATACTTCCAAATCTCGAGCCATATATGCATCTTCTTGAGCCAGAAATGCAACTTGAGAAGCAAAAAAATGAAATAAAAAGGCAAGAAGCATGGCAAGTTTACGGAGCCCTGCTGTGTGCAGTAGGCCAAAATATGCATGAAAAGGTCAAAAGATTCAACAGTTTGCTTCCCCCTCCAACTCGTGCTACTTCAATTGGCAATGGAAAAGCCATGATTGCAATGCCAGGTGTTACTGGGGCTATGGTGCCGATGAATTCCATGTCAGTTGACAACATGCAAGGGTCAACAAGTGGATTTTCCCCCATGATGGGAGTTTCTAATTCAAATGCCGGCATGTCATCAACAATGGGTCGTCAACTATCCAAAGAAAACAACAGTTCCTCTTCTATTCTAGCTCAGGCTTGGAAGGATGACATAGATGCAGGACAATTGCTGCCACCAGTGTTTGAATTATTTGGCGAGAGTCTGTTATCGTTTATACCAAAACCTGAATCATTTATATTTTTGTAA 1533 0.4025 MSVIPKETIEVIAQTIGITNLSSDVALALAPDLEYRIREIMQESIKCMRHGRRTFLTADDVDAALALRNLEPIYGFASNDPPRFKRASGHKDLFYIDDKDVDIKDLVEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPFEASSEIRQIEYKDDALPVDVKLPVKHIITTELQLYYEKIIELILNKPGSIPFRRALVTLATDSGLHPLVPYFTRFVADEVARNLNNLNILSALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRIGNRLSDNHWELRDFSANLVALICKRFGHMYHNLQPRVTKTFLHSFLDPTKALPQHYGAIKGITALGSRLVRLLILPNLEPYMHLLEPEMQLEKQKNEIKRQEAWQVYGALLCAVGQNMHEKVKRFNSLLPPPTRATSIGNGKAMIAMPGVTGAMVPMNSMSVDNMQGSTSGFSPMMGVSNSNAGMSSTMGRQLSKENNSSSSILAQAWKDDIDAGQLLPPVFELFGESLLSFIPKPESFIFL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01267 510 CDD TAF6C 165 381 IPR011442 GO:0006367
Trre5g01267 510 SUPERFAMILY ARM repeat 194 389 IPR016024 -
Trre5g01267 510 SUPERFAMILY Histone-fold 1 65 IPR009072 GO:0046982
Trre5g01267 510 FunFam transcription initiation factor TFIID subunit 6 164 369 - -
Trre5g01267 510 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 506 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Trre5g01267 510 SMART TAF_cls 2 68 IPR004823 -
Trre5g01267 510 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Trre5g01267 510 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Trre5g01267 510 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Trre5g01267 510 FunFam transcription initiation factor TFIID subunit 6 1 66 - -
Trre5g01267 510 Gene3D - 164 369 IPR046344 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01267 Trre-Chr5 8865271 8875748 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01267 K03131 - gmx:100799998 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01267 5 8865271 8875748 Trre5g01267 5 8865271 8875748 ECH