Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01200 ATGTCATCAAACCAGAACCTAAAAGACCTACAATGGTTTCTTCAAACAATCACCATGGAGAACCAAAACCTACACAGCATTTCCTTCTACCTTTCTCAACCAACCTCAAACTGTTACCAAGAAACAAACAACTCCATAAACATAAACATTTCCAAAGAAAATCAACAACACTTTTCCAACCTCTTAACATCACTAGCATCATCCAAGAACACAAGTTCAACTTTAAGAAACTTGGAGTTTCATAGAGTTGAATGGGAATCACAACAGGTAAAAAACCTTGGAACCCTTTTGAGGAATCACCAAAATGTAAAGCAAGTTGTTTTTAGAAGAAATAGATTCAATGGAAAAAGTATGAAAGATCTTTCTGATATTTTGAAGGAAAATAAAGTTATTAAAGAGATTATGTTTTCAGAATCATGTATTGGTTCTAATGGAGCTGGTTTAATTGGTTCTTCTCTTATGGTGAATCATAGTTTGGAAGAGTTGCAGATTTGGGAAGATTCAATAGGTTCAAAAGGTGCTGAAGAGATTTCAAAGATGATTGAAGTGAATCCAAATCTTAAACTTTTAACAATTTTTGACTCAAATGCTATTACTGCTACACCTCTTATATCTGCAGTTTTGGCAAGGAATAGAACAATGGAAGTTCATGTTTGGTGTGGTGATCAAAATGGTGAAAAAAGTTCTAAAGTTGTTGAATTTGTACCTGGTAATAGCACATTGAGAATTTACAAACTTAACCTTTCAGGTACTTGTAGAGTTGTTTGTTCTTTAGGAATGAATTTCACTGTTAAATCACTTGATATGACTGGTGTTAAGATAAAATCCAAATGTGCTAAGGAGTTTAGATGGGTTTTAGAACAAAACCAAACTATAAAAGAGGTTAATTTTTCAAGAACATGTCTTAAAGATAAGGGCATTGTGTATGTTGCAGCTGGACTGTTTAAGAATCATAGTCTGCAAACTTTGCATCTAACTGGAAATTTGTTCGGCGGAGTCGGTGTTGAGCATTTACTTTGTCCTTTGAGTAGGTTTTCATCATTGCAAATGCAAGCTAATATTACTTTGAAGTGTGTTACTTTTGGAGGAGGGAGAACAAGAATAGGAAGAGATGGTTTAGCTGCTATAACACAGTTTTTAATAACGAACGAGACGGTGACGCGGTTCGGTATACATGATGATGAGAGTTTGAGACAAGAAGATTTTGTTAAAATCTTTAAGAGCTTAGAGAAGAATGCTAGTTTGAAATGTTTGTCTTTGCAAGGATGTAAAGGTGTTCAAGGAGAGACATTGCTGGAGATAATCATGGAGACATTGCAGATAAATCCTTGGATCGAAGAAATTGATCTGTCTAGAACACCTTTACATAATTCTGGAAAGACTAATGGGATTTATCAGAGATTAGGGCAGAATGAGAATCCTGAACCAGAAATGGATTTGATCAAAGATATGCCGCTCACTGAGCCTAAGAGTTGCAGAGTTTTCTTTTGTGGGCAAGAATGTGCAGGCAAAACCACACTTTGTCAATCAGTATCGCAAAACTTCTCTTCTTCAGCGGCGCTTCCTTACTTGGATCAAGTAAGAACAATAGTGAATCCAGTGGAGCAAGCAGTCAAAACAACAGGAATGAAGATAAAAACATTTAAAGATGAAGATACAAAGATTTCAATCTGGAATTTAGCTGGTCAACACGAGTTTTTCTCCCTCCATGATCTTATGTTCCCGGGGCACGGAAGTGCATCGATTTTCATTATCATATCGAGTTTATTCAGGAAGCCAAGTAATAGAGAACCCAAAAGCACTGCAGAGATTGAAGAGGATTTGCAATATTGGCTCAGGTTCATAGTTTCCAACTCCAAAAGAGCAGTACAACAATGCATGCTACCAAGTGTAGCTGTTGTTCTTACACACTTTGATAAAATCAACCAATCATCACAAAATTTGCAGCAAACAGTTGAATCAATTCAGAGATTGAGAGATAAGTTTCAGGGCTATGTTGAATTCTACCCAACTGTATTCACCGTCGATGCAAGATCATCAGCATCGGTTAGTAAACTCACTCATCACATCCGAAAGACATGCAAAACAATTCTACAAAGAGTGCCGCGAGTTTACCAACTTTGCAATGATCTGATACAGATTTTATCAGAATGGAGATCAGAGAATTACAACAAGCCAGCTATGAAGTGGAAGGAGTTTGGTGAGCTATGTCAAGTAAAAGTCCCGCATTTGAGAATCCGATCAAGACATTATAATAAAGAAGCGGTTGAAATGAAACGAAAAGCTGTTGCTACTTGTCTTCATCACGTTGGTGAAGTGATTTATTTTGATGAGTTGGAGTTTCTAATTTTAGACTGTGAATGGTTCTGTGGTGAAGTACTTGGTCAGCTCATAAAGTTGAATGTAAGAAAGCAACACTCTTCAGAAAACAATGGATTCATTAGTAGGAAGGAACTTGAGAAAATCTTAAGAGGAAGTTTACAAAGTCCAATTCCTGGTGTGGGATCAAAGGTATTTGAGAACTTAGATGCTAGTGACCTTGTGAGAATGATGCTTAAACTTGAACTTTGTTATGAGCAAGATCCATCGGATCAAAATTCTCTACTATTGATTCCCTCCATTCTTGAAGAAGGTAGAGCAAAGCCTCAGAAGTGGCAGATAAGCGCACCAGACTGTCTTTATGCTGGACGCCATCTTGAGTGTGATGATTCAAGTCATATGTTTCTAACTCCTGGATTCTTCCCTCGCTTACAGGTGAACCTTCACAACAGAATAAAGGCTCTAACAAATCAACACGGTGCAACTTACAGTCTTGAGAAGTACCTCATTTCAATCAGCATTAATGGAATCTATATCAGAGTTGAGCTTGGAGGACAACTCGGTTACTATATCGACATCCTTGCATGCTCAACCAAAAACTTGACAGAAACTTTAAGAGTCATTCAGCAACTTATAATCCCGGCGATTCAAAGTGTTTGCCATGGGATCACCATGACTGAAAACGTCATTAGACCTGAATGTGTGCGAAACTTGACACCACCTAGATACAGAAGAACTCAATTTGTTTCCCTCCAGCAACTGAAACAAGCACTACTTTCACTTCCAGCAGACAGCATGTATGATTATCAACACACATGGAGTTCGGTCTTGGATTCTGGCAGGCCTATTCTCCACGAAGGGTTTGATTTTGCGCGAGACCTTTTGTCGGATGATGACTTCCGGGAAGTGCTGCATCGCAGATATCATGATCTACACAATCTTGCTCAGGAACTGCAAATCCCACCTGAAAACAATCCTGAAGGGCAAGATCATGCTGTAACCTTAAGCAATGAAGCTGAAAGAGTTGAACCAACCTTTGGAGGCATTGCTAAAGGGGTTGAAGAAGTTTTACAAAGACTGAAAATTATTGAACAAGAAATCCGAGACTTGAAGCAAGAAATCCAAGGGCTAAGATATTACGAACACAGACTCCTACTTGAGCTTCATCGCAAAGTGAATTACATAGCAACCTTCAATTCTCAAGTTGAGGAGAGGAAAGTACCTAACATGTTCTATTTCGTAAAAGCAGAGAACTACTCAAGGAGACTGATCACCACCATGGTTTCTGGCATGACTGCTCTCCGGCTTCACATGTTATGCGAGTTTCGGGGACAAATGCATGTTGTTGAAGATCAAATGGGTTGCGAAATGATGCAAGTTGATAACATGGTTGTGAAATCTTTAGCTCCATATATGAAAAAGTTCATGGTGATGGTAACTTTTGCTCTTAAAATAGGAGCTCATCTTGCAGCTGGAATGGGGCAAATGATACCAGATTTGAGCAAGGAAGTGGCTCATTTGTCTGGCTCTTCAGTTCTCTTCGGTGCAGCCGGGGCAACTGCGGCTGGTCTTGCAGGGGCTGCTGCTATCGGTCGTAGAAACAGGTCCACGGAAGGTTCAAGGGGCATTCAACAAGACATAAAAGCAGCACAGCAATGGATGGTTGATTTCTTGAGGGAAAGGAGGTGTTCCACAGGGAAGGATATTGCAGAGAAGTTCGGACTATGGCGTGTAAGGTACAGGGATAATGGCCAGATTGCATGGATCTGTAGGAGGCACATGTATGAAAGATCTGCGGAGATAATTGAAGTGCCTATTTGA 4140 0.3918 MSSNQNLKDLQWFLQTITMENQNLHSISFYLSQPTSNCYQETNNSININISKENQQHFSNLLTSLASSKNTSSTLRNLEFHRVEWESQQVKNLGTLLRNHQNVKQVVFRRNRFNGKSMKDLSDILKENKVIKEIMFSESCIGSNGAGLIGSSLMVNHSLEELQIWEDSIGSKGAEEISKMIEVNPNLKLLTIFDSNAITATPLISAVLARNRTMEVHVWCGDQNGEKSSKVVEFVPGNSTLRIYKLNLSGTCRVVCSLGMNFTVKSLDMTGVKIKSKCAKEFRWVLEQNQTIKEVNFSRTCLKDKGIVYVAAGLFKNHSLQTLHLTGNLFGGVGVEHLLCPLSRFSSLQMQANITLKCVTFGGGRTRIGRDGLAAITQFLITNETVTRFGIHDDESLRQEDFVKIFKSLEKNASLKCLSLQGCKGVQGETLLEIIMETLQINPWIEEIDLSRTPLHNSGKTNGIYQRLGQNENPEPEMDLIKDMPLTEPKSCRVFFCGQECAGKTTLCQSVSQNFSSSAALPYLDQVRTIVNPVEQAVKTTGMKIKTFKDEDTKISIWNLAGQHEFFSLHDLMFPGHGSASIFIIISSLFRKPSNREPKSTAEIEEDLQYWLRFIVSNSKRAVQQCMLPSVAVVLTHFDKINQSSQNLQQTVESIQRLRDKFQGYVEFYPTVFTVDARSSASVSKLTHHIRKTCKTILQRVPRVYQLCNDLIQILSEWRSENYNKPAMKWKEFGELCQVKVPHLRIRSRHYNKEAVEMKRKAVATCLHHVGEVIYFDELEFLILDCEWFCGEVLGQLIKLNVRKQHSSENNGFISRKELEKILRGSLQSPIPGVGSKVFENLDASDLVRMMLKLELCYEQDPSDQNSLLLIPSILEEGRAKPQKWQISAPDCLYAGRHLECDDSSHMFLTPGFFPRLQVNLHNRIKALTNQHGATYSLEKYLISISINGIYIRVELGGQLGYYIDILACSTKNLTETLRVIQQLIIPAIQSVCHGITMTENVIRPECVRNLTPPRYRRTQFVSLQQLKQALLSLPADSMYDYQHTWSSVLDSGRPILHEGFDFARDLLSDDDFREVLHRRYHDLHNLAQELQIPPENNPEGQDHAVTLSNEAERVEPTFGGIAKGVEEVLQRLKIIEQEIRDLKQEIQGLRYYEHRLLLELHRKVNYIATFNSQVEERKVPNMFYFVKAENYSRRLITTMVSGMTALRLHMLCEFRGQMHVVEDQMGCEMMQVDNMVVKSLAPYMKKFMVMVTFALKIGAHLAAGMGQMIPDLSKEVAHLSGSSVLFGAAGATAAGLAGAAAIGRRNRSTEGSRGIQQDIKAAQQWMVDFLRERRCSTGKDIAEKFGLWRVRYRDNGQIAWICRRHMYERSAEIIEVPI 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01200 1379 Pfam Ras of Complex, Roc, domain of DAPkinase 493 621 - -
Trre5g01200 1379 Pfam C-terminal of Roc, COR, domain 759 927 IPR032171 -
Trre5g01200 1379 SUPERFAMILY RNI-like 64 216 - -
Trre5g01200 1379 Coils Coil 1126 1153 - -
Trre5g01200 1379 Gene3D Ribonuclease Inhibitor 217 360 IPR032675 -
Trre5g01200 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 685 IPR027417 -
Trre5g01200 1379 SUPERFAMILY RNI-like 245 459 - -
Trre5g01200 1379 Coils Coil 641 661 - -
Trre5g01200 1379 Gene3D Ribonuclease Inhibitor 41 216 IPR032675 -
Trre5g01200 1379 Gene3D Ribonuclease Inhibitor 365 475 IPR032675 -
Trre5g01200 1379 PANTHER PROTEIN TORNADO 1 1 1378 - -
Trre5g01200 1379 Gene3D - 491 697 IPR027417 -
Trre5g01200 1379 Pfam Leucine Rich repeat 316 338 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01200 Trre-Chr5 8520793 8525516 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01200 - - mtr:11444833 2521.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01200 5 8520793 8525516 Trre5g01200 5 8520793 8525516 ECH