Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01137 ATGAACTCAGGTGACCTACACAAAGTTTGGGAAATCAGAGCTCTTAAGAGGAAGCCAGGGACAGAACAAGCTCACAAGATGTTGGAGAAGATCGCCAAACAGGTTCAGCCTATTATGCACAAACACAAATGGAGGGTCAAAGTTCTCTCTGAATTCTACCCAAGCAATCCGTCTCTTTTGGGGTTGAATGTTGGAGCTGGTATAGAAGTTAAGTTGCGGCTACGGAGGCCAAATAGGGATTCGGACTTTTATCAATTTGATCAAGTTTTAGATACGATGCTTCATGAGCTTTGCCATAATGCACACGGTCCTCATAATGCTAACTTCTACAAGCTATGGGATGAACTTCGAAAGGAATGTGAAGAGTTGTTGGCTAAGGGGATAACTGGCTCTGGGGAGGGGTTTGACCTCCCAGGAAAGCGCTTGGGTGGTTATTCTCGTCAACCTCCACTCTCATCTCTACGTAAAACTGCACTCGCAGCTGCGCAAAAGAGATCACAATTGGGATCTCTTCTTCCATCTGGACCTAATCGTATTGGTGGTGATAGTTTCATAATGAAGGCACTTAGTCCAGGACAAGCTGCTGCAATGGCTGCAGAAAGAAGATTACAGGATGACTTATGGTGTGGTTCTCAATCTTGTGATCCTTCAGACCATGAAGATGTTAACAATGACTCTTCTGAAAACCTTATAAATAAGCAGAAAAATGTGGGAAGCTCGAGACCAACAGACAACTGTACTCTAGCTATGGATCCAACATCTCGGAAGAGAAGTCGTGACAAGGATTCAAGTTTACCAGTTCATTCATCTAGTAACCCTAAATTTGTTGATTTGACAATGGATACACCAAAAAAGGGATGTGTCAATGAACATCAAATTGGGTCTCAGCAAAGAAGTTTTGGATCAAAAATCACCTCACATTCTCAATCGAATACTCATGAAGGTTCTACTTCTGCAAATGTATCAAGTTCATCTGGGTCACTATCTGGAGATAATAGAATACTTCATTTTGAAGAACCTGCATTATGGCAGTGTCTGACGTGCACTCTATTAAATAAATCATTAGCCCCTATCTGTGAATTGTGTGGCACGCAACAGCCGAAAGATGTTACTACAAAGCACAACACTTGGTCTTGTAAATTCTGTACGTTGGAAAACAGTGCAAAGTTGGAGAGATGCTCAGCCTGTGACGAGTGGAGATACTCTAATGGCTCCAACCTTGGCCCTTGA 1230 0.426 MNSGDLHKVWEIRALKRKPGTEQAHKMLEKIAKQVQPIMHKHKWRVKVLSEFYPSNPSLLGLNVGAGIEVKLRLRRPNRDSDFYQFDQVLDTMLHELCHNAHGPHNANFYKLWDELRKECEELLAKGITGSGEGFDLPGKRLGGYSRQPPLSSLRKTALAAAQKRSQLGSLLPSGPNRIGGDSFIMKALSPGQAAAMAAERRLQDDLWCGSQSCDPSDHEDVNNDSSENLINKQKNVGSSRPTDNCTLAMDPTSRKRSRDKDSSLPVHSSSNPKFVDLTMDTPKKGCVNEHQIGSQQRSFGSKITSHSQSNTHEGSTSANVSSSSGSLSGDNRILHFEEPALWQCLTCTLLNKSLAPICELCGTQQPKDVTTKHNTWSCKFCTLENSAKLERCSACDEWRYSNGSNLGP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01137 409 ProSitePatterns Zinc finger RanBP2-type signature. 343 362 IPR001876 -
Trre5g01137 409 MobiDBLite consensus disorder prediction 289 329 - -
Trre5g01137 409 SUPERFAMILY Ran binding protein zinc finger-like 339 366 IPR036443 -
Trre5g01137 409 ProSitePatterns Zinc finger RanBP2-type signature. 377 396 IPR001876 -
Trre5g01137 409 SMART zf_4 375 399 IPR001876 -
Trre5g01137 409 SMART zf_4 341 365 IPR001876 -
Trre5g01137 409 ProSiteProfiles Zinc finger RanBP2 type profile. 339 368 IPR001876 -
Trre5g01137 409 Pfam WLM domain 8 204 IPR013536 -
Trre5g01137 409 MobiDBLite consensus disorder prediction 233 252 - -
Trre5g01137 409 Gene3D - 338 376 - -
Trre5g01137 409 ProSiteProfiles WLM domain profile. 1 204 IPR013536 -
Trre5g01137 409 ProSiteProfiles Zinc finger RanBP2 type profile. 373 402 IPR001876 -
Trre5g01137 409 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 405 - -
Trre5g01137 409 MobiDBLite consensus disorder prediction 233 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01137 Trre-Chr5 7992927 7995195 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01137 K22685 - gmx:100795976 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01137 5 7992927 7995195 Trre5g01137 5 7992927 7995195 ECH