Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01116 ATGGAAGAAGGCGGAGCCCACGGTGATACCGGGGACCAATTCCACCGCAACGAAGCTATATCCGCCGTAGCCGACGACGGTTTCTTGGCCGAAGAAGACGAAGATTACGAGGATCTTTACAACGATGTTAATGTTGGTGAGGGTTTCCGTCAATCTTTACAGAAAAATGAGGATTCAGGAGTTAAAAACGACAATTTTGAAGATACGAAGCTGCCACCACCACCTCCGCTTCCATTGCCACCGCCACCACCACTACAGCCACAGCTGACAGTTCAAAATGCTGGTGGGGTTTCTTTACCTGGTGTGGGTGGGGTTGTTGAACCGAGGGTTTCTGGGTTTCAGAATCAAGGGTTTATAGGGAATGAGGTGGGTGTTCAAGGAGTTGGAAATAGGGTTGAATTAGGGCAGAAATCTGCTACATTGAGTGGGACTGGGGAACAAGGTGGTAATGCTGGTGTTGGTTTACAGGGGAATATTGGGCAACAGCAACCACTTGGTGTTGGTGGTTTTGTTGGGGGTGTTGGAAATGATGGATTGATGAGACAAGGACAAGGACAAGGTGAAGGTGGTGGTGGTGGAGGAGGAAATGCTTTATTATTTGTGGGTGATTTGCATTGGTGGACTACTGATGCTGACCTTGAAGCTGAGCTTTGCAAGTATGGGCAAGTTAAGGATTTGAGGTTTTTTGATGAGAAAGCTAGTGGGAAATCCAAAGGGTATTGTCAGGTAGAGTTTTATGATTCTTTAGCTGCAACTGCTTGCAAGGAAGGGATGAATGGGCATGCTTTTAATGGTAGGCCGTGTGTTGTTTCTTTTGCGACGCCTTTTACTGTTAAGAAAATGGGTGAGGCTCAACATAATAGGAATCAACCGATGAACCAAACTGCTGGGGCTAACCAGGGAAGGAGGGGGCCTGCTGAGGTTGGGACGGCTAAGCCGGGTGGTGGTAATGTTGGGACGAGTGGTAGCTACCAAGGTGGAGATGGGAATAATAATAACAATAATAATAATAGAGGTTATGGAAGAGGTAATTGGGGGAGAGGAAATAATCCTGGGATGGGGAATAGAGGACCTGTTAATCCGATGAGGAATAGGGGCGGTGGGATGGGTGGTAGAGGTATGATGGGTAATGGTGGAAATGGATATGGACCTGCTCCGCCTATGATGCATCCTCAGTCAGCGATGAATCAGGGTTTTGATCCTTCATTTGGGGGTCCCATGGGTAGAATGGGTGGCTATGGAGGCTTTCCCGGTGGCCCGACGCCTCCATTCTCTGGGATGATGCCTTCATACCCTGGTGTTGGTATGCATGGAGTATCACCTCATGTTAATCCTGCCTTTTTTGGAAGAGGGATGCCTATGAATGGTATGGGGATGATTCCGCCATCAGCTATGGATGGTCCTAACATGGGAACGTGGCCGGATCCAAATATGGGTGGATGGGGTGGTGATGATTTTGGTGGTGGCAAGGTTGCAGAGTCAAGTTATGGGGAAGAAGCCGCTTCTGACCATCAGTATGGTGAGGTGAATCCTGATAGAGCTGGTTGGTCTAATGCTATCAGAGAAAAAGATAGAGGATCAGAGAGGGATTGGTCTGGTACTTCAGAACGGAAGTTTAAGGATGATAGAGATCATGAATATGAGAGAGATCAAGAATATGAGAGAGAAGAGCCTAGAGCAAAAGATGTGGGACGTGACCATGAAGAAAGAAGGAATCCTGATGATAGAGAAATGGGACGAGAACGATCTCGGGACCGTGATCGTGCACGATCTCGGGACCGTGATCGTGCACGATCTCGAGACCATGATCGTGACCGTGAAAGGAGTCGGGACCGTGACCGTGATAGGCACAGGGAAGACAGGGACAAGTATATGGATCATCATAGATACAAAGACCGTGAGACACAGCACGATGATGAGTGGGAGAGGGGTCGGTCATCAAGGACTCGCAGCAAATCACGACTATCAACACATGAGGAGGAACACCATTCTAGAAAAGATTCTGATTATGGAAAGAGGAGGCGGCTTACCTCTGAATAA 2040 0.4814 MEEGGAHGDTGDQFHRNEAISAVADDGFLAEEDEDYEDLYNDVNVGEGFRQSLQKNEDSGVKNDNFEDTKLPPPPPLPLPPPPPLQPQLTVQNAGGVSLPGVGGVVEPRVSGFQNQGFIGNEVGVQGVGNRVELGQKSATLSGTGEQGGNAGVGLQGNIGQQQPLGVGGFVGGVGNDGLMRQGQGQGEGGGGGGGNALLFVGDLHWWTTDADLEAELCKYGQVKDLRFFDEKASGKSKGYCQVEFYDSLAATACKEGMNGHAFNGRPCVVSFATPFTVKKMGEAQHNRNQPMNQTAGANQGRRGPAEVGTAKPGGGNVGTSGSYQGGDGNNNNNNNNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGMMGNGGNGYGPAPPMMHPQSAMNQGFDPSFGGPMGRMGGYGGFPGGPTPPFSGMMPSYPGVGMHGVSPHVNPAFFGRGMPMNGMGMIPPSAMDGPNMGTWPDPNMGGWGGDDFGGGKVAESSYGEEAASDHQYGEVNPDRAGWSNAIREKDRGSERDWSGTSERKFKDDRDHEYERDQEYEREEPRAKDVGRDHEERRNPDDREMGRERSRDRDRARSRDRDRARSRDHDRDRERSRDRDRDRHREDRDKYMDHHRYKDRETQHDDEWERGRSSRTRSKSRLSTHEEEHHSRKDSDYGKRRRLTSE 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01116 679 MobiDBLite consensus disorder prediction 316 343 - -
Trre5g01116 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Trre5g01116 679 MobiDBLite consensus disorder prediction 517 679 - -
Trre5g01116 679 MobiDBLite consensus disorder prediction 283 359 - -
Trre5g01116 679 MobiDBLite consensus disorder prediction 283 300 - -
Trre5g01116 679 SUPERFAMILY RNA-binding domain, RBD 197 301 IPR035979 GO:0003676
Trre5g01116 679 MobiDBLite consensus disorder prediction 69 88 - -
Trre5g01116 679 Gene3D - 186 286 IPR012677 -
Trre5g01116 679 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Trre5g01116 679 CDD RRM_CFIm68_CFIm59 199 272 - -
Trre5g01116 679 MobiDBLite consensus disorder prediction 468 679 - -
Trre5g01116 679 SMART rrm1_1 198 271 IPR000504 GO:0003723
Trre5g01116 679 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 16 618 IPR034772 -
Trre5g01116 679 MobiDBLite consensus disorder prediction 47 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01116 Trre-Chr5 7857590 7859629 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01116 K14398 - gmx:100813702 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01116 5 7857590 7859629 Trre5g01116 5 7857590 7859629 ECH