Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01111 ATGCAGAACCTTCTCCCACCGTCAACTATGGCGGCGTTCACGGCGGCACTACTACTCTTCATCTCCGCCATTATCACAACCTCCAACGCACACAACATCACAGACATTCTCTCCAAACACCCTGAATTCTCTTCCTTCAACCACTACCTAACCCTAACACACCTCGCACCAGAAATCAACGGCAAAAACACAATCACCGTCTTAGCCGTCGACAACGCCGCCATGCACGACTTAACATCAAAAAATACTTCGATCTACACCATCAAAAACATCCTCTCCCTCCACGTTCTCCTCGACTATTACGGAGCCAAAAAGCTTCACCAAATCACAAACGGAACCTCTCTCGCCGCCACATTGTACCAAGCCTCCGGTACCGCTCCTGATTCATCAGGATTCGTCAACATTACCGATCTTCACGGCGGAAAAGTCGGATTCGGTGCTCAAAACAACCACGGAACCCTAACTGCTACTTACGTCAAATCAGTTCAAGAAATTCCTTACAACATTTCAGTTCTACAAATCAGTCAAATTCTTCCCTCCGACGCCGCTGAAGCTCCTACACCACCACCTAGCGAACAAAACATCACCGCTATAATGTCCAAACACGGTTGCAAAATCTTCGCCGAAACACTTGCTGCTTCTCGTGACGCATTCAGCACTTTTAACGACAATCTCAACGGCGGATTAACCGTTTTTTGTCCCGCCGATGATGCTTTCAAAGCTTTCTTACCGAAATTCAAAAACCTAACCGCTGCCGGAAAAATCGCTCTTCTCGAATTTCACGGTGTTCCGGTTTATCAATCAAAAGCTATGCTGAAATCGAGTAACGGACTTATGAACACTCTTGCTACAGAGCGTGCTGACAGTTACGATTTCAATGTTCAAAACGACGGGGAAGAGATCACGTTGAAGACGAAAGGTGTAACTGCTAGGATCATTGATACGATCCTTGACGAAGAACCGGATGCGATCTTTACTATTTCTAAGGTTCTTCTTCCAGAGGAGTTGTTTAAAGGTAAAGCTGAGAGTCCTTCTCCGGCTCCGGCGCCGGAGCCGGCTGCTGCTGATGCTCCTGAGCCGCATAAGAAAAAGGGAAAGAAGAAGAAGAAAGCTGCTGATGCGCCGGCGGAGGATGATTCTGACTCGCCGGCTGATTCGCCGGACGATTCAGCTGATGATACTGCTGATGATAGTGACGGCGCCGTTAGGTTTAACGGTATCTTTGTTATGGTTTTGAGTTTGGGTTTGGGAGTTTTAATGCTGTGA 1266 0.4747 MQNLLPPSTMAAFTAALLLFISAIITTSNAHNITDILSKHPEFSSFNHYLTLTHLAPEINGKNTITVLAVDNAAMHDLTSKNTSIYTIKNILSLHVLLDYYGAKKLHQITNGTSLAATLYQASGTAPDSSGFVNITDLHGGKVGFGAQNNHGTLTATYVKSVQEIPYNISVLQISQILPSDAAEAPTPPPSEQNITAIMSKHGCKIFAETLAASRDAFSTFNDNLNGGLTVFCPADDAFKAFLPKFKNLTAAGKIALLEFHGVPVYQSKAMLKSSNGLMNTLATERADSYDFNVQNDGEEITLKTKGVTARIIDTILDEEPDAIFTISKVLLPEELFKGKAESPSPAPAPEPAAADAPEPHKKKGKKKKKAADAPAEDDSDSPADSPDDSADDTADDSDGAVRFNGIFVMVLSLGLGVLML 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01111 421 MobiDBLite consensus disorder prediction 340 399 - -
Trre5g01111 421 SUPERFAMILY FAS1 domain 36 178 IPR036378 -
Trre5g01111 421 ProSiteProfiles FAS1/BIgH3 domain profile. 191 331 IPR000782 -
Trre5g01111 421 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 402 IPR033254 -
Trre5g01111 421 Gene3D FAS1 domain 176 334 IPR036378 -
Trre5g01111 421 SMART fasc_3 230 334 IPR000782 -
Trre5g01111 421 MobiDBLite consensus disorder prediction 378 395 - -
Trre5g01111 421 FunFam Fasciclin-like arabinogalactan protein 2 29 171 - -
Trre5g01111 421 Gene3D FAS1 domain 28 175 IPR036378 -
Trre5g01111 421 Pfam Fasciclin domain 41 116 IPR000782 -
Trre5g01111 421 Pfam Fasciclin domain 204 333 IPR000782 -
Trre5g01111 421 SUPERFAMILY FAS1 domain 188 334 IPR036378 -
Trre5g01111 421 ProSiteProfiles FAS1/BIgH3 domain profile. 30 178 IPR000782 -
Trre5g01111 421 FunFam Fasciclin-like arabinogalactan protein 10 184 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01111 Trre-Chr5 7829315 7830580 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01111 - - cam:101502229 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01111 5 7829315 7830580 Trre5g01111 5 7829315 7830580 ECH