Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01106 ATGAAGCCACGAAAACTTCATTCTTCGGTACTCTCACGTGCGCTATCACGTGCCCTAAGCTCTTCAACCACCATAACCACATCGACGCAATGTGGATCGGCGTTTCCATTAAAGACAGTAACCGTTGCAAACTTTGAACCGTCGTTAACGGAGCTCCGGCACCATGTCCGGTCATCGGACTTTGTTGCGATTGACCTCGAGATGACCGGAGTTACCAGTTCTCCCTGGCGTGATTCATTTGAGTTTGATCGCTCTGACGTCAGGTATCTTAAGGTTAGAGACTCCGCGAGCAGGTTCGCCGTTGTTCAATTCGGCGTTTGTCCTTTCCGATGGGATCATTCCAACCAGTCCTTTGTCGCTTATCCGTACAATTTCTTTGTTTTTCCACGTCAGGAGCTTGCAGGTTTTGGTCCATGTAATGAATTTCTCTGCCAGACTACTTCTTTGGATTTCTTGGCTAAATACCAGTTTGATTTTAATGCATGCATACATGAAGGAATATCTTATTTGTCCAGAGAACAAGAAAGAGAAGCATTAAGGAGTTTGAATTCAACACATGATAGAGAGTGGTCAGACATTTCCAAATTAAATGATGTTAGGGACACACCATCTGTCAACATGGCAGACATTTTATTCACTGCACGAATGAAAGATAAGTTCATTGAATGGCGCGATGGGTTACTACAGGAGCAAAATCAGTCAGGCCAAATACAAGGAAATAAAAAAGACTCAAAACAACAATTTCAAGAGATGTTCTTTAAGACGCATCCAGCTCTCAAGCTTGATGGATTCACCTCACGTCAGCTTAAGTTGATTCAGTTGGTTATAAAAAGACACCTCAAAGATCTTTCTTATATCAATGTGAACAATGAGGTTTCTGGTTCACAACAAATAGTTGTGTATACAGACTCGGAGGATGAGCTAAACTTACTTCTGAAGGAGGTAAAAGAGGAAAATCACAGGGCAAAAGAGGTGAAGATCCGATCTGCAGTCGGATTTCGCCATGTTATTGATCTCCTTTCGTCAGAACAGAAGTTGATAGTTGGTCATAATTGTTTTCTAGATATCGCTCACGTCTACAGCAAATTTATCGGTCCTCTTCCTGAGGCACCTGAAGAGTTTGTTGCCTCTGTTAACAAGTGCTTTCCACATATTGTTGACACAAAAATACTCATGAACACTAATTTTATGCTCCAAGAAAGAATGAAAAAGTCAAAAAAATCTCTGGCTTCTGCATTTACTATGTTTTGTCCACAAATTGCCGGAGGCTCCAAAAGCACTGAGCTAGTTTCACCATCCTATGTGAAAGTAAATGTTGAAGTTGATGATTCAAGATCGTCTAGCTGGAACCCTGGTGGCAAGCATGAGGCAGGATATGATGCTTTCATGACTGGATGCATTTTTGCCCAGTTATGCAATGATTTAGGAGTCGATTTTAAACTCCACGAATCTTCAAAACAATTAGCTTTCAATGAGAAACTACAGAAATACATTAATCATCTATATCTTAGTTGGATGCACGGCGATATTATTGATCTAAATACAGGTGATAAAGTTGCAAATTCTACACCAAGCTATAACCTCAAGAGACGGTACCCAAAGATTATGTTCGAGAATATTGTTATTATTTGGGGATTTCCTTCTAAAATAAAGGCTGGTGAAGTACGAGAGTGTATATGTAAAGCTTTTGGTCTAACTGCTGTGGTTTCTGTCTACCACTTGGATGCAACAGCAGTGTTCGTTCAGTTTAGCAAAACTGAACTAGTTTCCGACTTTCTTTTATTGAAGGAAAGCTTAGAGAGAAGTAACGGTCCAATCTCGGTTTTGCATCCGCTGTCAAAACTTTTGGAAGGTGGAAATACATGTGCTGCTAATTATGATACTTATAAAGAAATTTGTGGTTCACCCTTATCAGAAACTCTATTTGCTGATCAAGCAAACAAAGTTTCTATGAAGTGGAAAACCAAATTGATTGAAAACAAGATATCATTAAGCAGCGAAGAACATGAAAGTTCACATGTACAAGCTAATGCAAATGATGTAGCATTGAAGTTTGTAGAAAATATCAAGCCAAACACAATTGATCAGTTAAGAAATGATCAATCCCTTGGGCAAGCCTCCCAATCTGAGATTGAAGAATCTTGTGCTGCAGAAGCCAATTTGTGA 2166 0.3975 MKPRKLHSSVLSRALSRALSSSTTITTSTQCGSAFPLKTVTVANFEPSLTELRHHVRSSDFVAIDLEMTGVTSSPWRDSFEFDRSDVRYLKVRDSASRFAVVQFGVCPFRWDHSNQSFVAYPYNFFVFPRQELAGFGPCNEFLCQTTSLDFLAKYQFDFNACIHEGISYLSREQEREALRSLNSTHDREWSDISKLNDVRDTPSVNMADILFTARMKDKFIEWRDGLLQEQNQSGQIQGNKKDSKQQFQEMFFKTHPALKLDGFTSRQLKLIQLVIKRHLKDLSYINVNNEVSGSQQIVVYTDSEDELNLLLKEVKEENHRAKEVKIRSAVGFRHVIDLLSSEQKLIVGHNCFLDIAHVYSKFIGPLPEAPEEFVASVNKCFPHIVDTKILMNTNFMLQERMKKSKKSLASAFTMFCPQIAGGSKSTELVSPSYVKVNVEVDDSRSSSWNPGGKHEAGYDAFMTGCIFAQLCNDLGVDFKLHESSKQLAFNEKLQKYINHLYLSWMHGDIIDLNTGDKVANSTPSYNLKRRYPKIMFENIVIIWGFPSKIKAGEVRECICKAFGLTAVVSVYHLDATAVFVQFSKTELVSDFLLLKESLERSNGPISVLHPLSKLLEGGNTCAANYDTYKEICGSPLSETLFADQANKVSMKWKTKLIENKISLSSEEHESSHVQANANDVALKFVENIKPNTIDQLRNDQSLGQASQSEIEESCAAEANL 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01106 721 SUPERFAMILY Ribonuclease H-like 38 481 IPR012337 -
Trre5g01106 721 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 40 634 - -
Trre5g01106 721 Pfam CAF1 family ribonuclease 40 468 IPR006941 -
Trre5g01106 721 Gene3D - 240 518 IPR036397 GO:0003676
Trre5g01106 721 Gene3D - 39 204 IPR036397 GO:0003676
Trre5g01106 721 Coils Coil 301 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01106 Trre-Chr5 7770618 7775493 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01106 K01148 - gmx:100784997 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01106 5 7770618 7775493 Trre5g01106 5 7770618 7775493 ECH