Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01105 ATGTCGGACAAGGGTCGGCCACTGCCAAAATTTGGTGAATGGGATGTCAATGATCCAGCCTCAGCGGAGGGGTTCACTGTGATTTTTAATAAGGCAAGGGATGAGAAAAAGACAGGTGGGAATCCTGAGTCACCAGGAAAGACTGCAACTGAACCTCATAGTAAACCTGCAGTAGATCCTGGCAAACCTCAGAGTAAAAAATGGTTTTGCTGCATACAAAACCCTCCTGCAGAATCATAA 240 0.4583 MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPGKTATEPHSKPAVDPGKPQSKKWFCCIQNPPAES 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01105 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 70 IPR040387 -
Trre5g01105 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Trre5g01105 79 MobiDBLite consensus disorder prediction 31 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01105 Trre-Chr5 7763220 7767345 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01105 - - gmx:100305826 162.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01105 5 7763220 7767345 Trre5g01105 5 7763220 7767345 ECH