Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01063 ATGAAGATCACTGTCATGACTGCTGATGAACAAATTCTCTCTTTGGATGTCGATCCTCATGAATCTGTGGAAAACGTTAAGGCATTGCTTGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAACAGATTCTGTTCAATGGGAATGAAGTAAGCAATTCTCAGAAATTGAGTGCCCTTGGTGTTAAGGACGATGATTTGCTAATGATGACCGTCTCGTCTGGTACTGGCGCTGGTGCTTCTAGTGGAGCTACCAATGATTTAAGCTTCAATACTGATGGATCTGCTATAAACCCTGGTGCTTTTCAGCAGCACTTTAGACGTGATTCTAATTTGATGGGCCAGCTCTTTCAGAATGACCCGGAGTTGGCACAAGTTATTTTGGGGAATGATCTCAATAAACTCCAGGAAATTTTACGATTGCGTCATCGCCAAAGAGATCAATTACGGCGTCAGAAAGAAGAAGAGATGGCTCTTCTTTATGCCGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCGATCCGCCAGAAAGGAATTGATGAAAATTGGGAAGCTGCACTCGAGCATAATCCTGAAGGTTTTGCAAGAGTGGTCATGTTATATGTTGACATGGAGGTTAACGGCGTACCAATGAAGGCATTTATTGATAGTGGAGCACAATCTACCATTATATCAAAAACCTGCGCTGAGCGTTTAGGATTGCTGAGACTTTTAGATCAGCGTTACAAAGGAGTTGCTCACGGAGTTGGCCAAACCGAAATATTGGGTCGAATACATGTAGCTCCAATCAAGATTGGGAATATATTTTACCCTTGTTCATTTACGGTGCTGGATTCTCCCAACATGGAGTTTCTCTTTGGGCTGGATATGCTCCGAAAGCATCAGTGTATAATTGATTTAAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCGTTTTTGCAAGAGAAAGACATACCATCTCGGTATTTAGATGAGGAAAAATATTCCAAGGAAGCTTCAAGCTCAGGAAGCCCACGCCCAGTTGCAGCAGGAAGCAATAATCCGTCACAAGCAGGCGTGTCTTCTGGAGGAGCTTCCGGTGACAACTCTAAGGATTCTGTGTTTGAAAGCAAAGTTGCAAAGCTTGTTGAGCTAGGATTTGAAAGACAAGCAGTTATACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAAGCAGCTGGATTTCTTTTTGGATGA 1236 0.4256 MKITVMTADEQILSLDVDPHESVENVKALLEVETSVPLQQQQILFNGNEVSNSQKLSALGVKDDDLLMMTVSSGTGAGASSGATNDLSFNTDGSAINPGAFQQHFRRDSNLMGQLFQNDPELAQVILGNDLNKLQEILRLRHRQRDQLRRQKEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEGFARVVMLYVDMEVNGVPMKAFIDSGAQSTIISKTCAERLGLLRLLDQRYKGVAHGVGQTEILGRIHVAPIKIGNIFYPCSFTVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRYLDEEKYSKEASSSGSPRPVAAGSNNPSQAGVSSGGASGDNSKDSVFESKVAKLVELGFERQAVIQALQLFNGNEEQAAGFLFG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01063 411 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 409 - -
Trre5g01063 411 CDD Ubl_Ddi1_like 1 71 IPR033882 -
Trre5g01063 411 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Trre5g01063 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 372 411 IPR015940 -
Trre5g01063 411 MobiDBLite consensus disorder prediction 339 370 - -
Trre5g01063 411 Gene3D - 337 411 - -
Trre5g01063 411 MobiDBLite consensus disorder prediction 333 370 - -
Trre5g01063 411 CDD UBA_scDdi1_like 375 410 - -
Trre5g01063 411 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Trre5g01063 411 FunFam DNA damage inducible 1 homolog 2 179 326 - -
Trre5g01063 411 Pfam UBA/TS-N domain 375 408 IPR015940 -
Trre5g01063 411 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Trre5g01063 411 Gene3D - 1 84 - -
Trre5g01063 411 Pfam Aspartyl protease 179 301 IPR019103 GO:0004190|GO:0006508
Trre5g01063 411 SMART ubq_7 1 72 IPR000626 GO:0005515
Trre5g01063 411 SUPERFAMILY UBA-like 364 411 IPR009060 GO:0005515
Trre5g01063 411 CDD RP_DDI 186 309 IPR019103 GO:0004190|GO:0006508
Trre5g01063 411 Coils Coil 131 154 - -
Trre5g01063 411 SUPERFAMILY Acid proteases 186 302 IPR021109 -
Trre5g01063 411 SMART uba_6 374 411 IPR015940 -
Trre5g01063 411 Gene3D Acid Proteases 180 326 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01063 Trre-Chr5 7428657 7434173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01063 K11885 - gmx:100779464 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01063 5 7428657 7434173 Trre5g01063 5 7428657 7434173 ECH