Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01060 ATGGCTGCTCCAAATCAATCACCATCACCAACTCCTTTCGATATGCACTCTTTCTTCAATCCCCCAAACCCTAACCCTAACCTTTCTTCTCCCTTCCCTCCTTCTGCTCCTTCTCCACCACCCTCTTCTTCCTCTTCTTACCCTCCTCCCACCGGTCCTTTCCCTCCTCAACCTTTCCCAATCCACCAAAACAACAACAACAACAACAATAATTACCCTTACGATCACTACCAGAACAATTTCCCAATCCACCACCGTTCAATTTCATTTCCTACTCCACCTCTTCAACCTCAACCTATCCCTCCACCTTCCAATCCAAACGCCGGTGCTCGTCTCATGGCTCTTCTCAGCGCCCCTCCTCCAACACAACAGCAACAACCGCAACAACAACAGCCGCAACCTGTTAATTCTCCTTTGCCTCTTGCTACTCCCTCCGCTGCTGCTATTACAGCGGCTAATGCTGCTGCGGCTGCTTTGATTCGGTTGCCGAGTAGTAAGGTTCCTAAGGGAAGGCATTTGATTGGTGACCATGTTGTGTATGATGTTGATGTTAGGTTGCCTGGTGAAGTACAGCCTCAGCTTGAAGTTGCTCCGATTACCAAATATGGGTCGGATCCTAATCCGGTTTTGGGTCGACAGATTGCTGTGAATAAGTCTTATATATGTTATGGGTTGAAACAGGGGAATATCAGGGTGCTTAATATTCATACTGCAGTTAGATCTTTGCTTAGAGGACACACTCAGAGGGTCACAGACTTAGCATTCTTTGCTGAAGATGTTCATTTGCTGGCTAGTGTTGGCACAGATGGCCGTGTCTTTGTGTGGAAAATTTCTGAAGGTCCTGATGATGAAGATAAACCTCAAATTACTGCTAATATTGTTATTGCTATTCAAATAGTAGGAGAAGAGAAAGTTGAACATCCTCAAATTTGCTGGCACTGCCACAAACAAGAGATTTTGATAGTTGGTATGGGAAGACATGTTCTGAGAATTGACACCACAAAAGTTGGAAATGGTGAAGCCTTCGTGGCAGAAGATCCTCCGAAATGTCCTCTTGACAAGCTCATTGATGGGGTTCAGATTGTAGGAACACATGATGGGGAGGTCACTGATTTGTCAATGTGCCAATGGATGACAAATCGATTGGTATCTGCATCACAGGATGGCACGATAAAAATATGGGAAGATCGGAAGACAAAACCACTTGCTATTTTAAGGCCACATGATGGGAATCCTGTTTTTTCTGCTACATTTTTTACTGCTCCCCACCAGCCTGGCCATATTGTCCTTATCACAGCGGGACCACAAAACCGGGAAGTGAAGGTCTGGGTCTCAACAAGTGAAGAAGGCTGGCTGCTCCCAAGTGATACTGAATCCTGGAAATGCACTCAGACATTGGAGTTGAATAGTTCAGCTAAGCCAACTCTAAAGGATGCATTCTTTAATCAAGTTGCAGCATTGCCTCACGCAGGTCTGCTTTTACTTGCAAATGCCCAGAGGAATGCTATATATGCTGTGCACTTAGAATATGGTCCTAATCCTGAATCAACTCGCATGGATTATTTAGCCGAGTTTACTGTGACAATGCCCATTCTTAGTTTTACTGGAACAAGTGATATTTTGCCTCATGGCGAACATGTTGTTCAGGTTTATTGTGTTCAGACACAGGCTATTCAGCAGTATGCTTTGGATTTAGCACAATGCTTGCCTCCACCATCGGAAAATGTGGGACTAGATAAGTCAGATTCCAGTGTTTCCCGAGATGTAATTACTGCTGAAGGATTCGCCTCTTTAGAATCGCCCGCAGGTAGAACATCTGAGATATCTTTACCTAGTTCTGCTCCCAAGACAATGATGCAAGCAAGTAGCACCGATAGTGGTCTTGTGGCAAGATACCCTTTAAGCTCTGGTCATATTGAGGCACCTATTTCTAGAGAATTCAGCAGTTCAAATATTGAAGCTAAAACTGTTACATTGGCTCCTTCTAGTAGTGATGCTGATATTGTTTGTGTTCCTTCTCCACCTCTTCCTTTGAGCCCAAGGTTGTCCAGGAAGCTTTCTGATTTCAGGAGTCCACAATCTAACTTGAGTGATCATGTTGGGGACCAAGCTGTTAATGATTATTCAGTTGAAAGACAAATGGGTACCATTCACAGGAACTTGTCTGACCAATTGAATAGTGATTTAAAGAATGATGAAAAGAAAAACAAACAGGATGACATTTCTAGTGTACTTAACCCTTCTGTCATGTTTAAGCAACCAACTCATCTGGTTACACCATCTGAGATAACTAAAGCCAGTTCCTCCTCTGAGACTAATATGATCGATAGAATGAGTGAGATAGAAACAAAGATCCAGGATGTGGTTGATGTGGGTAATGCCGAAGTAGAAGTGAAAGTGGTAGGTGAGGCAAGGCCTTATCAAAATGATGAATTTGGAAGGCAGGGTCCACAACAAAACCCTGTTTCTGATGGCAAAGAAAAATTCTTTTGCTCTCAGGCTTCTGATCTTGGCATTGAGATGGCCCGAGAATGTGGTGCAATAGGTGGGGAGACTTACATTACAGAGCAAACTGGACACGTTGATTCTACTGGAGGGGACTCGCTGGCCCAACCTTCTAATGCAGGCGATGATAGACTTCAAGACTTGCCAAAAGATGTACATGAAAGGGTTTCTGACTCATCTGCATTAATGGTAGTACCACCGTCACCTGCACCTAATGCAAAAGGGAAGAGACAAAAGGGTAAAAATTCTCAACCATTAGGTCCGTCTTCCCCATCTCCAAGTGCATGCAATTCAACTGATTCGTCCAATGAACCAAATGGAATTTCAAACCTTCAATCTACAGAAAATGGTTTGCCTCAAATTATGGCAATGCAAGAGTCAATCAATCAGTTATTGACAATGCAAAAGGAGATGCAGAAACAAATGACGATGATGGTTGCAGCTCCAGTTACAAAAGAAGGTAAAAGGCTTGAGGCTGTCCTAGGGAAAAGCATGGAAAAAGCTGTCAAGTCCAATGCTGATGCTCTGTGGGCTAGAATTCAAGAGGAGAATGCAAAAAATGAAAAGTTGCTGCGAGATCGTATCCAACAAGTTACAACAGGTTTGATTACTAACTTCATGAACAAGGATCTACCGTCAATATTGGAGAAAACTGTAAAGAAGGAAATGGGTTCAGTTGGGCAAGCTGTAATTCGTTCAATGTCTCCTGCTATTGAGAAAATAATATCCTCTACTATAGTGGAAACCTTCCAGAGAGGAGTGGGCGACAAAGCAGTGAATCAACTTGATAAGTCAGTTAATTCAAAACTCGAAGTTACCGTAGCTAGGCAAATTCAAGCACAGTTTCAGACAACTGCCAAACAGGCGCTTCAGGATGCACTCAAGTCCAGTTTTGAAACAACAGTGGTTCCTGCATTTGAGATGTCCTGCAAAGCCATGTTTGAGCAAGTGGATACTACATTCCAGAAAGGTTTGGCTGAACATTCAAATGCAGTTCAGCAACGCCTTGAATCGGGTCCTACTTCATTGGCAATGACATTAAGGGATTCCATTAATTCAGCCTCATCAGTTACTCAAACCTTGAGTAGAGAAGTGCTTGAGGGCCAGAGAAAGCTAATGGCACTTGCAACCTCAAGAACAAACTCAGGCACATTGAGTACTCTGCCCATCCAGCTGAACAATGGTCCTTTACTTCATGAAAAGGTTGAGGCACCACTAGATCCCACGAAGGAGCTAGCAAGGTTGATTTCTGAACGCAAATATGAGGAGGCGTTTGTTGCAGCACTGCATAGAAGTGATGTATCTATTGTATCTTGGTTATGTTCTCAGGTTGATTTACATGGACTTTTGTCAATGGTACCTCTTCCCTTAAGCCAAGGTGTAGTACTTTCCCTTTTGCAGCAGTTGGCGTGTGATATCAACAATGACATGTCCCGAAAGATTTTGTGGATGACAGACGTGTCTACTGCCATAAATCCCTCAGATCCCATGATAACAATGCACGTCCGACCCATCTTCGAGCAAGTCTATCAGATACTAAATCATCAACGCAACTTGCCTTCAATCTCTGGATCTGATCTTTCAAGTATCCGTCTTTTATTGCATGTCATCAACTCTATGCTTACCACATGTAAATGA 4143 0.433 MAAPNQSPSPTPFDMHSFFNPPNPNPNLSSPFPPSAPSPPPSSSSSYPPPTGPFPPQPFPIHQNNNNNNNNYPYDHYQNNFPIHHRSISFPTPPLQPQPIPPPSNPNAGARLMALLSAPPPTQQQQPQQQQPQPVNSPLPLATPSAAAITAANAAAAALIRLPSSKVPKGRHLIGDHVVYDVDVRLPGEVQPQLEVAPITKYGSDPNPVLGRQIAVNKSYICYGLKQGNIRVLNIHTAVRSLLRGHTQRVTDLAFFAEDVHLLASVGTDGRVFVWKISEGPDDEDKPQITANIVIAIQIVGEEKVEHPQICWHCHKQEILIVGMGRHVLRIDTTKVGNGEAFVAEDPPKCPLDKLIDGVQIVGTHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKTKPLAILRPHDGNPVFSATFFTAPHQPGHIVLITAGPQNREVKVWVSTSEEGWLLPSDTESWKCTQTLELNSSAKPTLKDAFFNQVAALPHAGLLLLANAQRNAIYAVHLEYGPNPESTRMDYLAEFTVTMPILSFTGTSDILPHGEHVVQVYCVQTQAIQQYALDLAQCLPPPSENVGLDKSDSSVSRDVITAEGFASLESPAGRTSEISLPSSAPKTMMQASSTDSGLVARYPLSSGHIEAPISREFSSSNIEAKTVTLAPSSSDADIVCVPSPPLPLSPRLSRKLSDFRSPQSNLSDHVGDQAVNDYSVERQMGTIHRNLSDQLNSDLKNDEKKNKQDDISSVLNPSVMFKQPTHLVTPSEITKASSSSETNMIDRMSEIETKIQDVVDVGNAEVEVKVVGEARPYQNDEFGRQGPQQNPVSDGKEKFFCSQASDLGIEMARECGAIGGETYITEQTGHVDSTGGDSLAQPSNAGDDRLQDLPKDVHERVSDSSALMVVPPSPAPNAKGKRQKGKNSQPLGPSSPSPSACNSTDSSNEPNGISNLQSTENGLPQIMAMQESINQLLTMQKEMQKQMTMMVAAPVTKEGKRLEAVLGKSMEKAVKSNADALWARIQEENAKNEKLLRDRIQQVTTGLITNFMNKDLPSILEKTVKKEMGSVGQAVIRSMSPAIEKIISSTIVETFQRGVGDKAVNQLDKSVNSKLEVTVARQIQAQFQTTAKQALQDALKSSFETTVVPAFEMSCKAMFEQVDTTFQKGLAEHSNAVQQRLESGPTSLAMTLRDSINSASSVTQTLSREVLEGQRKLMALATSRTNSGTLSTLPIQLNNGPLLHEKVEAPLDPTKELARLISERKYEEAFVAALHRSDVSIVSWLCSQVDLHGLLSMVPLPLSQGVVLSLLQQLACDINNDMSRKILWMTDVSTAINPSDPMITMHVRPIFEQVYQILNHQRNLPSISGSDLSSIRLLLHVINSMLTTCK 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01060 1380 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 196 508 IPR032401 -
Trre5g01060 1380 MobiDBLite consensus disorder prediction 118 132 - -
Trre5g01060 1380 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 362 395 - -
Trre5g01060 1380 MobiDBLite consensus disorder prediction 912 949 - -
Trre5g01060 1380 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 285 IPR001680 GO:0005515
Trre5g01060 1380 Gene3D - 1292 1380 IPR044938 -
Trre5g01060 1380 MobiDBLite consensus disorder prediction 686 702 - -
Trre5g01060 1380 MobiDBLite consensus disorder prediction 807 826 - -
Trre5g01060 1380 MobiDBLite consensus disorder prediction 61 86 - -
Trre5g01060 1380 MobiDBLite consensus disorder prediction 1 141 - -
Trre5g01060 1380 FunFam enhancer of mRNA-decapping protein 4 195 509 - -
Trre5g01060 1380 MobiDBLite consensus disorder prediction 15 60 - -
Trre5g01060 1380 MobiDBLite consensus disorder prediction 812 826 - -
Trre5g01060 1380 Gene3D - 302 509 IPR015943 GO:0005515
Trre5g01060 1380 MobiDBLite consensus disorder prediction 857 949 - -
Trre5g01060 1380 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 6 1378 IPR045152 GO:0031087
Trre5g01060 1380 MobiDBLite consensus disorder prediction 857 875 - -
Trre5g01060 1380 SUPERFAMILY WD40 repeat-like 209 508 IPR036322 GO:0005515
Trre5g01060 1380 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 404 IPR001680 GO:0005515
Trre5g01060 1380 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 280 - -
Trre5g01060 1380 MobiDBLite consensus disorder prediction 683 702 - -
Trre5g01060 1380 FunFam Enhancer of mRNA-decapping protein 4 1292 1378 - -
Trre5g01060 1380 SMART WD40_4 358 395 IPR001680 GO:0005515
Trre5g01060 1380 SMART WD40_4 236 276 IPR001680 GO:0005515
Trre5g01060 1380 SMART WD40_4 398 444 IPR001680 GO:0005515
Trre5g01060 1380 Gene3D - 168 293 IPR015943 GO:0005515
Trre5g01060 1380 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01060 Trre-Chr5 7403822 7412233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01060 K12616 - gmx:100798228 2064.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01060 5 7403822 7412233 Trre5g01060 5 7403822 7412233 ECH