Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00684 ATGTTTCTATTTTTCTTCCTTTTTCTTTTCTTCTTCATCAACCCTTCTCAACAAACAACCTCTTCTTCACTCTCACTCTCTTTCCCTTTAACATCACTCTCTCTTTCAACAAACACAGCCTCAAAAATGCTATACACATCTAAACTATTTTCACCATCTTCAAAAAAACCAAACAAAACAACACCTTCTTATAACTACAAATTTTCTTTCAAATACTCAATGGCTCTCATCGTTAATCTTCCCATTGGAACACCACCTCAAACACAACAAATGGTGTTGGACACAGGTAGTCAACTTTCATGGATTCAGTGTCACAAAAAACAACCTCCAACGGCGTCGTTTGATCCTGCTCTCTCTTCAACTTTCTCTATTCTTCCTTGTACTCACCCTCTTTGTAAACCACGAATTCCCGATTTTACCCTCCCAACTTCTTGTGACCAAAACCGTCTCTGCCATTACTCCTACTTTTACGCTGACGGTACTTATGCTGAGGGTAATCTCGCCAGAGAAAAATTCACATTTTCTCGTTCCGTTTCTACCCCTCCTTTAACCCTCGGTTGCGCTACAGAATCTACTGACCCCAGGGGTATTTTAGGAATGAACCTCGGACGTTTATCCTTCGCTCATGAATCCAAAATTACCAAATTCTCTTACTGTGTACCCGCTCGTCAAATTCAATCCCAAACCCGACCCGGTTCATCTCCAACCGGATCTTTTTACCTAGGTAACAACCCGAATTCCAAATGGTTCAAGTACATCAAAATGGTGACTTTTTCTCCACGTCAACGCATGCCGAATCTTGACCCATTAGCTTACACTTTACCTATGCAAGGGATAAGAATTGCCGGCAAGAAATTAAATATTTCGCCGGCGGTTTTCCGTGCGGATGCTGGCGGGTCGGGTCAAACCATGATTGACTCCGGATCCGAGTTCAGTTATTTGGTTAGTGAAGCTTATGATAAAGTGCGGGAAGTAGTGGTTAAAGCTGTGGGGCCCAGAATTAAGAATGGTTACGTGTACGGTGGAGTAGCTGACATGTGTTTCGATAGTAAAAATGCTGTTGAGATCGGACGGTTGATAGGTGAGATGGTTTTTGAATTTGAGAAAGGTGTAGAGATTGTGATTCCAAAGGAAAGAGTACTTGCTGACGTGGGTGGTGGGGTCCACTGTGTTGGAATTGGAAGTTCAGATAAATTAGGTGCAGCAAGTAACATTATTGGGAATTTTCATCAACAAAATCTATGGGTGGAATTTGATCTGGTGAATCGTAGGGTGGGATTTGGTAAGGATGATTGTAGCAGATTTGGGAAGTGA 1314 0.4209 MFLFFFLFLFFFINPSQQTTSSSLSLSFPLTSLSLSTNTASKMLYTSKLFSPSSKKPNKTTPSYNYKFSFKYSMALIVNLPIGTPPQTQQMVLDTGSQLSWIQCHKKQPPTASFDPALSSTFSILPCTHPLCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLAREKFTFSRSVSTPPLTLGCATESTDPRGILGMNLGRLSFAHESKITKFSYCVPARQIQSQTRPGSSPTGSFYLGNNPNSKWFKYIKMVTFSPRQRMPNLDPLAYTLPMQGIRIAGKKLNISPAVFRADAGGSGQTMIDSGSEFSYLVSEAYDKVREVVVKAVGPRIKNGYVYGGVADMCFDSKNAVEIGRLIGEMVFEFEKGVEIVIPKERVLADVGGGVHCVGIGSSDKLGAASNIIGNFHQQNLWVEFDLVNRRVGFGKDDCSRFGK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00684 437 Gene3D Acid Proteases 52 240 IPR021109 -
Trre5g00684 437 FunFam Aspartyl protease family protein 55 238 - -
Trre5g00684 437 Pfam Xylanase inhibitor N-terminal 77 224 IPR032861 -
Trre5g00684 437 ProSiteProfiles Peptidase family A1 domain profile. 76 428 IPR033121 -
Trre5g00684 437 Pfam Xylanase inhibitor C-terminal 271 428 IPR032799 -
Trre5g00684 437 SUPERFAMILY Acid proteases 77 434 IPR021109 -
Trre5g00684 437 CDD pepsin_A_like_plant 77 432 IPR034161 -
Trre5g00684 437 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 91 102 IPR001969 GO:0004190|GO:0006508
Trre5g00684 437 Gene3D Acid Proteases 241 436 IPR021109 -
Trre5g00684 437 PANTHER ASPARTYL PROTEASE-RELATED 3 435 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00684 Trre-Chr5 4667274 4668587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00684 78 437 Miscellaneous Gene Families AT1G44130 22.727 1.81e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00684 - - psat:127083785 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00684 5 4667274 4668587 Trre5g00684 5 4667274 4668587 ECH