Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00681 ATGGCTAAATTGCTTAAAAAACTTCGCTTTCCTGCTTCCCATGCTTTCTCCTCCTCTACAGTTATCACTAATTCATTGCCCATTTCATTTTCCGGTAAAAGACTTTCTCACTGGTATCAAACTGGAGAATATGGTTGGAAAGCAAATCTTAGGGATCCTTGTTTATGGATTGTTATATCTGGACATGTAGTTGTGACTCTAGAGATTAGTGCCAACACTGCGTTTGCAGAGGATGTAACGTCTGAAACATCTTCTGCAAATAGCACTGGGGATGATTTAACAGGATTAAGAAAAATTGAGGATGGTTCTGTAGCATCAAATATACATACAGCAAAATGGAGAGTCTTTACTGATAAAGGAAGAGAGCTTTTCCTACAGGGAAAATTAGATGATGCTGAAAGACTATTCGTGGCTGCCATACAAGAAGCTAAAGAAGGTTTTGGCGAGCAAGATCCGCATGTTGCGTCTGCATGCAACAATCTGGCAGAGTTGTACAGAGTAAAAAAGGCATTTGACAAAGCAGAACCGTTGTATTTGGAAGCTATCAAGATCTTAGAGGAATCTTTTGGTCCTGATGATGTAAGGGTTGCGGTTGCTGTTCACAACCTAGGGCAGTTCTACGTTGGTCAGAGGATGTTGGAGAAAGCTCAAGTTAGCTATGAGCGCGCTTTGAAGATAAAAAGGCGTGTTCTGGGATATGGCCATTCAGAATGTTCAGATACAATGTATCAGATCGGCATGGTGTTATATCTTCAAGGAAAAGAAAGGGATGCAGAGACCATTATTAAGGAATCAATAAGCATGCTAGAGTCAGGTGGTGAAGGGGAGTCATTTGTATGCATTAGAAGACTTCGTTTCCTCTCGCAGTTATATTTGAAATCAAATCGTCTTGATGAAGCTGAGATGATCCAAAGAAAGATCCTGAATATAATGGAATTATCAAAGGGATGGTATTCCTTGGACACAGTTATTGCAGCTGAATCCTTGGCTCTAACCCTACAAAAATCTTCCGAAACAAAACAATCGAAAGAACTTCTTGAAAGATGTCTTGATGTTCGGAAAGCTTTACTTCCTGGTGATCATATTCAGATTGGTGCAAATCTACTTCATCTCGCAAGAGTGGCAAAGCTTGATTATAGCCAACACAAAAATTTGGATGTTTCTAGAGCTAAAGCTGTGCTTGATACGGCAAAGGAACATTTGCATAATTCGATAAGGATTGCGCGTCAATGCTTAGATAAAGTATTAAAACAAAAAGACAAGCCGAAGAAAAACAGTGTGCATGGAAATTCTAGAAAGGAAGCCCAAGCAGCATTTGTCATATTGTTGCAATCACTCAGTACTTTATCATCGGTGGAGTTGGATAAGCAAGAATTGCAGAAAATTCAGGAAGGTGATATTAATCTCGAGGCTCAAGAGGCACTTCTTCAATGCATTGCTGCTTACAACGAGTTTGTTGTACATAAGAAGTCCATTGCTGATTCCCCAGAAATAAAGAACGAATATCTTTCATGTTTTAAGCATGCTCAAACCTTGCTTGGCAATAAACTTGATGAGAGGGTATCCGAAAGCTGA 1575 0.3962 MAKLLKKLRFPASHAFSSSTVITNSLPISFSGKRLSHWYQTGEYGWKANLRDPCLWIVISGHVVVTLEISANTAFAEDVTSETSSANSTGDDLTGLRKIEDGSVASNIHTAKWRVFTDKGRELFLQGKLDDAERLFVAAIQEAKEGFGEQDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILEESFGPDDVRVAVAVHNLGQFYVGQRMLEKAQVSYERALKIKRRVLGYGHSECSDTMYQIGMVLYLQGKERDAETIIKESISMLESGGEGESFVCIRRLRFLSQLYLKSNRLDEAEMIQRKILNIMELSKGWYSLDTVIAAESLALTLQKSSETKQSKELLERCLDVRKALLPGDHIQIGANLLHLARVAKLDYSQHKNLDVSRAKAVLDTAKEHLHNSIRIARQCLDKVLKQKDKPKKNSVHGNSRKEAQAAFVILLQSLSTLSSVELDKQELQKIQEGDINLEAQEALLQCIAAYNEFVVHKKSIADSPEIKNEYLSCFKHAQTLLGNKLDERVSES 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00681 524 Gene3D Tetratricopeptide repeat domain 279 482 IPR011990 GO:0005515
Trre5g00681 524 SUPERFAMILY TPR-like 236 354 IPR011990 GO:0005515
Trre5g00681 524 SUPERFAMILY TPR-like 111 258 IPR011990 GO:0005515
Trre5g00681 524 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 4 518 - -
Trre5g00681 524 SMART tpr_5 197 230 IPR019734 GO:0005515
Trre5g00681 524 SMART tpr_5 155 188 IPR019734 GO:0005515
Trre5g00681 524 SMART tpr_5 113 146 IPR019734 GO:0005515
Trre5g00681 524 SMART tpr_5 239 272 IPR019734 GO:0005515
Trre5g00681 524 Gene3D Tetratricopeptide repeat domain 113 277 IPR011990 GO:0005515
Trre5g00681 524 Pfam Tetratricopeptide repeat 157 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00681 Trre-Chr5 4639693 4648053 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00681 - - psat:127083788 850.892