Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00680 ATGTCTCTCCTTTCAGATCTCATCAACCTTGACCTCTCAGATTCCACTGAGAAAATCATAGCTGAATATATTTGGATTGGTGGATCAGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTTCCAGGACCAGTTACTGACCCTTCACAGCTTCCCAAGTGGAACTATGATGGTTCCAGCACAGGTCAAGCTCCCGGAGAAGATAGTGAAGTTATTATATACCCACAAGCCATTTTCAAGGATCCGTTCAGAAGGGGTAACAATATCCTGGTTATATGTGATGCATACACTCCTGCTGGAGAACCAATTCCCACTAACAAGAGACACGCAGCAGCCAAGGTTTTCAGCCATCCTGATGTTGTTGCTGAAGAAACATGGTATGGTATTGAGCAAGAATACACCTTGTTGCAGAAAGATGTCCATTGGCCTCTTGGTTGGCCAGTTGGTGGTTTTCCTGGACCTCAGGGACCATACTATTGTGGTGCTGGTGCTGACAAGGCTTTTGGCCGTGACATTGTTGACGCACATTACAAAGCCTGTCTTTATGCTGGCATCAACATCAGTGGAATCAATGGTGAAGTAATGCCTGGTCAATGGGAATTCCAAGTTGGTCCCTCAGTTGGTATCTCTGCTGGTGATGAGATTTGGGCTGCACGTTACATTTTGGAGAGGATCACTGAGATTGCTGGTGTGGTGCTTTCCCTTGACCCTAAACCAATTAAGGGTGATTGGAATGGTGCTGGTGCTCACACAAATTACAGCACAAAGTCTATGAGAGAAGAAGGTGGCTATGAAGTCATCAAGAAAGCAATTGAGAAGCTAGGGAAGAAGCACGCCGAGCACATTGCTGCTTATGGAGAAGGCAACGAGCGCCGATTGACAGGGCGACACGAGACAGCTGACATTAATACCTTCTTATGGGGTGTTGCAAACCGTGGTGCTTCGATTAGAGTTGGAAGGGACACCGAGAAAGAAGGGAAGGGTTACTTTGAGGATAGGAGGCCAGCATCTAACATGGATCCATATGTTGTTACTTCCATGATTGCAGACACAACCATCCTCTGGAAACCATAA 1071 0.4641 MSLLSDLINLDLSDSTEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKVFSHPDVVAEETWYGIEQEYTLLQKDVHWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVLSLDPKPIKGDWNGAGAHTNYSTKSMREEGGYEVIKKAIEKLGKKHAEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00680 356 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Trre5g00680 356 FunFam Glutamine synthetase 104 356 - -
Trre5g00680 356 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Trre5g00680 356 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Trre5g00680 356 FunFam Glutamine synthetase, chloroplastic 1 103 - -
Trre5g00680 356 SUPERFAMILY Glutamine synthetase/guanido kinase 103 351 IPR014746 GO:0003824
Trre5g00680 356 Pfam Glutamine synthetase, catalytic domain 152 345 IPR008146 GO:0004356|GO:0006807
Trre5g00680 356 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Trre5g00680 356 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Trre5g00680 356 PANTHER GLUTAMINE SYNTHETASE 4 354 - -
Trre5g00680 356 MobiDBLite consensus disorder prediction 51 65 - -
Trre5g00680 356 SUPERFAMILY Glutamine synthetase, N-terminal domain 13 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
Trre5g00680 356 MobiDBLite consensus disorder prediction 38 66 - -
Trre5g00680 356 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Trre5g00680 356 Pfam Glutamine synthetase, beta-Grasp domain 24 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Trre5g00680 356 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 356 IPR008146 GO:0004356|GO:0006807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00680 Trre-Chr5 4631953 4635570 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00680 K01915 - gmx:548082 704.516