Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00678 ATGGAGGAACCCAACTACGAACAAGAAAACCAATTATCGCACAAAATCGCCGCAATTCTCGACGAAGTTCGAACATCATACGCTACACACAACCGTAAACTCAAAGAACTATCACTCCTCCGATCCAAATCATCTTCACCGTCGGAATTCTTCTCCGCTTTCTCCAAATCCCTAATTCCTCTCTTCACCTTCCAGAAACGCCTTGCCTCTGCTGATCGTGTTGTTTCGTTCGTCTCCTCTTTTACTGCCGCACGTAATCCTGCCGATTCCGAAGTTTGCGATGAGTTTCTCGACCATTTCCTTCATTTCCTCCTTGTTGCTGCGACGGCGGCCGATAAGACTGTTAGATTTAGAGCCTGCCAGATCGTTTCTGAGATAATATTGAGGTTGCCAGATGATGCAGAAGTGAGCAATGACCTATGGGATGAGGTCATAGAATGTATGAAGGTTAGGGTACGGGACAAGATCCATGTGGTGCGTACTTTTGCGGTTAGGGCGCTTTCACGTTTTGTGAATGACTCTTCAAACATTGACATCCTTGATTTATTCCTTGAGATGCTTCCTTTAGAACAAAATGCGGACGTTCGTAAGATGATTGTGTTGTCTTTGCCTCCTTCCAGTGCAACCTCTCAAGTTATCATTGACTGTACCTTGGATGTGAGTGAATCTGTTCGCAAAGCAGCATACTGTGTTTTAGCTAATAAATTTCCTCTTCAAAGCTTAAGCATTAAGCTCAGGACAATAATTCTTCGGAGAGGACTTTCTGACCGATCTGTTGGTGTCTCGAAGGAATGTTTCAAACTATTGAAAGATGAATGGCTTATAAAGTGCTGTAACGGTGACCCTTTAGAGCTTTTGAAGTATCTCGATGTCGAAACCTATGAATCAGTGAGCGAGTCTGTCATGGAGGCACTTCTAAAAGCTGGTTTAGTAAAACTAAAGAATGGTGCAAGTATCCAGCAGTTTATATCATCAAATGGTGACACAGCAGAAGGGGAAGCGGTTCCTTGTCCACCAAACATTGTGCTGATGGAAGCAGAGGCTGCTCTTTATTGGAGAACTGTTTGCAAACATTTGCAGTCAGAAGCACATGCTTTAGGCTCTGATGCTGCTGCCACCGCGGGCACCGAAGCAGAAGTATATGCTGCAGAAGCATCAGATAAAAATGACCTTCTAGAAAAAATTCTTCCTGCTACAGTTGACGAATACATAGAGTTGGTCAGTGCCCATATTGTTGCGGGATCAAACCATCGGTTTGCATGCCGGCAGCTGCTTTTGCTTGGTGCTATGTTTGATTTTTCTGACACTTCATATAGAAAAGCTGCTAGCATGTTTCTGCAGGGGCTGATGAGCAAACCTCCTGAGCACGAGGTTGATAATGAAGGGAATGTTGTCGTCATTGGAGATGGCTTAAGTTTTGGTGGAGATACTGAGTGGGCAGAAGCCATAGCCAAATTGGCAAGGAAAGTCCATGCAGCTCCTGGTGAATTTGAAGAAGTTGTTCTTGCAATTGTAGAAAAGCTTGCTCAACCTTGCAGAGAGAGAACAGCGGATTATGTGCAGTGGATACACACCCTTTCTCTTATAGGCCTTCTACTGAAAAATGCAGTGTCCATGCGCTTTCTTCAGGGCAAGGCTATAGAACCAGATGAACTTCTCCAATCATTACTTCTTCCCGGGGCCAAACAATCTCACTTGGACGTGCAAAGAATTGCTGTAAGATGTCTTGGCCTCTTTGGGCTTTTGGAGAGGAAACCAAATGCTGAACTTTTGAAACAGCTACGGATTTCATACATTAGGGGGCCACATTTAATTAGTATTGAGGCTTGTAAAGCATTAACTGATCTTGTGATGTGGCATGGTCCTCAAGAAGTTGACAGGGTTTTAAATCACGATATTCCAAGCCAAGTAAACAGTGACAAAAATTGTTTTTGTCCTGTGAATTTCTCTGATTCAGAAGTGGATTCAAATTCAAACGTTGACACGCTTGATCTTTTATACGGTGGCATTGAAAATGAAAACTGGGCTAATCCTTTAACTAGCAGTGAAGACGAATGCATTTATGCTATACTTGGGGAGGGCTTTGCGAAAATTCTTCTCCTAAGTGACAACTATCCAAGCATACCAGCTTCTTTGCACCCTGTGCTTTTATCTAAGCTCATTTACTTGTACTTCAGTGACATATCAGAAAATATGCACAGGTGGTTGAAGCAATGCTTATCTGTTTTCTTTGAGAACTACCCATGTCTCTCAACAAATCACAAGAGGTGTATATTGAAGGCCTTCATTCCAGTTATGCGTTCAATGTGGCCAGGAATTTTTGGCAATTCTGGGGGTTCTCCTTTTATGGTATCTCAGATGCGTAAGCGTGCAGTTCAAGCTTCCCGTTTTATGTTGCAGATGGTGCAGATTCCATTATTTGTTAAAGAGACTGAAGCTGCATGTGAAAACTCTAGTACAGAACAGCCACAAGTTATAGATAGTTGCGCTGAAGTCCCATTTGAGTGTGGCGAGGAGGGGCTCGCACTACGCATAGCCGTAGAGGTTGCAAGCTTTCACTCAAAGAAGACACCTGCTGAGAAGGCGTATGTATCGGCATTATGTAGAATACTTGTCTCCCTTCATTTTCGGTTATCAGAACAAGGGCCAATAAAAATTATGAGGAAACTTTTATGTCGAATGGTTGAATGTGTATCTTCAGAGAAGGATCTTGTTAAAGAATTGAAGCGCATGGCAGAGCATCTAGTGACAATTGACAGGCAACAAGACCAGGAATTGTTGCAAGATGAAGTTAATCTCATTTTGGGGAAACTGGAACTGGACTTCAACCTTGATTGGGATGCTTCTGTTGAAATACCACAAACACCAGCTGTACAGCGAACAAGAGCTACACGAACAAGGAGAAGGGTAAGGATCGAGGAAGTTAGTTCTGATGATGAAGAAGAAGATTCATATGCTTCTGTGGTTCCTACCACCGTTAATACAGTAAAAGGTCGCTCACAGAGAGCAAGCAAAACTGCAGCCATGAACAAGATGTCGTCTGCCCGTAGATCAGTCAAAACCGATGAAATTGAAGAGGAAGAGGAAGAAGAGTCGAACATGACATCTGAAGATTCTGAAGAATCAGAACAGAGTAGTTAA 3141 0.4301 MEEPNYEQENQLSHKIAAILDEVRTSYATHNRKLKELSLLRSKSSSPSEFFSAFSKSLIPLFTFQKRLASADRVVSFVSSFTAARNPADSEVCDEFLDHFLHFLLVAATAADKTVRFRACQIVSEIILRLPDDAEVSNDLWDEVIECMKVRVRDKIHVVRTFAVRALSRFVNDSSNIDILDLFLEMLPLEQNADVRKMIVLSLPPSSATSQVIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKLRTIILRRGLSDRSVGVSKECFKLLKDEWLIKCCNGDPLELLKYLDVETYESVSESVMEALLKAGLVKLKNGASIQQFISSNGDTAEGEAVPCPPNIVLMEAEAALYWRTVCKHLQSEAHALGSDAAATAGTEAEVYAAEASDKNDLLEKILPATVDEYIELVSAHIVAGSNHRFACRQLLLLGAMFDFSDTSYRKAASMFLQGLMSKPPEHEVDNEGNVVVIGDGLSFGGDTEWAEAIAKLARKVHAAPGEFEEVVLAIVEKLAQPCRERTADYVQWIHTLSLIGLLLKNAVSMRFLQGKAIEPDELLQSLLLPGAKQSHLDVQRIAVRCLGLFGLLERKPNAELLKQLRISYIRGPHLISIEACKALTDLVMWHGPQEVDRVLNHDIPSQVNSDKNCFCPVNFSDSEVDSNSNVDTLDLLYGGIENENWANPLTSSEDECIYAILGEGFAKILLLSDNYPSIPASLHPVLLSKLIYLYFSDISENMHRWLKQCLSVFFENYPCLSTNHKRCILKAFIPVMRSMWPGIFGNSGGSPFMVSQMRKRAVQASRFMLQMVQIPLFVKETEAACENSSTEQPQVIDSCAEVPFECGEEGLALRIAVEVASFHSKKTPAEKAYVSALCRILVSLHFRLSEQGPIKIMRKLLCRMVECVSSEKDLVKELKRMAEHLVTIDRQQDQELLQDEVNLILGKLELDFNLDWDASVEIPQTPAVQRTRATRTRRRVRIEEVSSDDEEEDSYASVVPTTVNTVKGRSQRASKTAAMNKMSSARRSVKTDEIEEEEEEESNMTSEDSEESEQSS 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00678 1046 MobiDBLite consensus disorder prediction 972 1046 - -
Trre5g00678 1046 PANTHER CONDENSIN COMPLEX SUBUNIT 3-RELATED 3 1043 IPR027165 GO:0000796|GO:0007076
Trre5g00678 1046 MobiDBLite consensus disorder prediction 987 1015 - -
Trre5g00678 1046 SUPERFAMILY ARM repeat 87 766 IPR016024 -
Trre5g00678 1046 Gene3D - 63 308 IPR011989 -
Trre5g00678 1046 Pfam Nuclear condensing complex subunits, C-term domain 526 876 IPR025977 -
Trre5g00678 1046 MobiDBLite consensus disorder prediction 1024 1046 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00678 Trre-Chr5 4604225 4612838 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00678 K06678 - gmx:100817677 1545.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00678 5 4604225 4612838 Trre5g00678 5 4604225 4612838 ECH