Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03976 ATGAAAGCTTCATTACACATTACTACTACTCTTGCTCTTTCACCTAACCAATTACTCAATGCATCCACTCCTGGGGATAAATATTTTGGTTTGAAATATAACAAAGATAGGAGTGTTGTATTGACAGTGGTAGCCAGTGGAAAGGGTGGTGGTGTGTTGGATAAGCCACCAACAATAGAGAAAACAACACCTGGTCGAGAATCTGAATTTAATTTAAGGAAATCAAAGAAAACATCACCACCATATAGAGTAATGCTACACAATGATAACTACAATAAAAGAGAATATGTAGTACAAGTGTTGATGAAAGTGATACCTGGAATGACAGTTGATAATGCAGTTAACATCATGCAAGAGGCACATTATAATGGATTAGCAGTGGTAATTATATGTGCTCAAAATGATGCTGAAGATCATTGCATGCAATTGAGAGGAAATGGCCTTTTAAGTTCAATTGAGCCAGGTGATGGTGGTTGTTGA 480 0.3667 MKASLHITTTLALSPNQLLNASTPGDKYFGLKYNKDRSVVLTVVASGKGGGVLDKPPTIEKTTPGRESEFNLRKSKKTSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGLAVVIICAQNDAEDHCMQLRGNGLLSSIEPGDGGC 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03976 159 SUPERFAMILY ClpS-like 76 153 IPR014719 -
Trre3g03976 159 Gene3D - 76 154 IPR014719 -
Trre3g03976 159 FunFam ATP-dependent Clp protease adapter protein CLPS1, chloroplastic 76 154 - -
Trre3g03976 159 Hamap ATP-dependent Clp protease adapter protein ClpS [clpS]. 62 156 IPR022935 GO:0006508
Trre3g03976 159 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 18 159 IPR022935 GO:0006508
Trre3g03976 159 Pfam ATP-dependent Clp protease adaptor protein ClpS 77 145 IPR003769 GO:0030163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03976 Trre-Chr3 51023088 51024759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03976 K06891 - gmx:100785379 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03976 3 51023088 51024759 Trre3g03976 3 51023088 51024759 ECH