Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03956 ATGGAAGATGATGAATCACCACAACTCAAAAGTGTTGTTATAATTTCCCTTCCACCTTCAAATAACCCTTCTTTAGGTAAAAAAATCACTGCTTTTACTTTCTATAACCCTTTTTCTCGACAACAACAACCTCAATCCCAACAACAACAACAACAGCAACAACAACAACCTCAAAACAATGATGTTTCATTCCAATCCTACCCATCAAATCCTCAAAATCTGTTTTCATTCAGAAGACTCTTTAACAGTGCCCCAATAAAGCTTTTCACTTTTTTTGGGGTTTTTCTCTTTGCCCTTTTTCTCTATGGTTCTCTTTATTCAACTGAAACAACACTTGAACTATTTCGTCTTAAGAATGATAATGATGGTGATAATGAACCTAGTTCCATTCTATTTCCATTGTTTCCAAAACATGGTGTTGTTGGTCAGAGGGATTTGAAGCTTAAATTGGGGAAGATTGTTGATGTTAAAAGAAGAAACTTTGTTGCTTCTAATTCTAGGGTAGTGGCTGTTGATTCATCATCTACTGTTTTTCCAATCAGTGGCAATGTTTTTCCAGATGGGTTGTATTACACACATTTACGTGTCGGTAACCCTCCAAAACGTTATTTTGTTGATGTGGATACTGGGAGTGACTTAACTTGGATTCAGTGTGATGCTCCTTGCAGAAGTTGTGCAAAGGGAGCAAATGCGCCATACAAGCCAACAAGATCCAATATAGTTCCATCTATAGACTCTCTCTGCTTGGAAGTTCAAAAGAATGAATATCATGAAAGTTTCCAACAGTGTGACTACGAAGTTAAATATGCAGACCATAGTTCTTCCTTAGGAGTTCTTATTAAAGATGAGCTTCATCTTATGACCACTAATGGAACCAAAACCAAGTTAAATTTTGTTTTCGGATGTGGATATGATCAAGAGGGCTCTCTTTTGAACTCGTTGGCAAAAACAGATGGAATCATGGGACTGAGCAGGGGGAAAGTTGGTCTACCTTATCAGTTGGCAAGTAAAGGGATTATTAAGAACGTCGTTGGTCATTGCTTAGGCAATGACGGAGTTGGTGGCGGATACATGTTCTTAGGTGATGATTTTGTACCTTATTGGGGTATGACTTGGGTGCCTATGGTCCAGACTACAGATTTATACCAAGCTGAGATTCTTGGAGTAAACTATGGAAATCGTCGACTTGGTTTTGAAGGACACAGCAAAGTAGGAAAGGTGGTTTTCGATAGTGGCAGTTCTTATACCTATTTTCCCAAAGAGGCGTACCAGGACCTTATTGCTTCTCTTAAAGAAGTTTCTGGGTTGGGACTCATTCAAGATGATTCTGATACAACTTTGCCGATTTGTTGGCAAGCTAATTTCCCAATCAGATCTGTCAAAGATGTCAAGGATTACTTCAAGACATTAACGCTTCGTTTCGGAAACAAGTGGTGGATTTTGTCCACATTGTTTCGGATACCGCCGGAGGGTTACTTGATTATTAACAACAAAGGCAATGTTTGCTTATCTATTCTTGATGGTAGCAATGTAAATGATGGATCCACAATTATACTTGGAGATATTTCATTGCGAGGATATTTGGTTGTGTATGACAATGTGAACAAGAATATTGGTTGGGAGCAAACCAAATGTAGCATGCCAAGTAGAATATTGAAGAAGACTCACAATTTCTTAAGTGATAGTATATTATGA 1695 0.3811 MEDDESPQLKSVVIISLPPSNNPSLGKKITAFTFYNPFSRQQQPQSQQQQQQQQQQPQNNDVSFQSYPSNPQNLFSFRRLFNSAPIKLFTFFGVFLFALFLYGSLYSTETTLELFRLKNDNDGDNEPSSILFPLFPKHGVVGQRDLKLKLGKIVDVKRRNFVASNSRVVAVDSSSTVFPISGNVFPDGLYYTHLRVGNPPKRYFVDVDTGSDLTWIQCDAPCRSCAKGANAPYKPTRSNIVPSIDSLCLEVQKNEYHESFQQCDYEVKYADHSSSLGVLIKDELHLMTTNGTKTKLNFVFGCGYDQEGSLLNSLAKTDGIMGLSRGKVGLPYQLASKGIIKNVVGHCLGNDGVGGGYMFLGDDFVPYWGMTWVPMVQTTDLYQAEILGVNYGNRRLGFEGHSKVGKVVFDSGSSYTYFPKEAYQDLIASLKEVSGLGLIQDDSDTTLPICWQANFPIRSVKDVKDYFKTLTLRFGNKWWILSTLFRIPPEGYLIINNKGNVCLSILDGSNVNDGSTIILGDISLRGYLVVYDNVNKNIGWEQTKCSMPSRILKKTHNFLSDSIL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03956 564 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 407 418 IPR001969 GO:0004190|GO:0006508
Trre3g03956 564 PRINTS Pepsin (A1) aspartic protease family signature 407 418 IPR001461 GO:0004190|GO:0006508
Trre3g03956 564 PRINTS Pepsin (A1) aspartic protease family signature 517 532 IPR001461 GO:0004190|GO:0006508
Trre3g03956 564 PRINTS Pepsin (A1) aspartic protease family signature 196 216 IPR001461 GO:0004190|GO:0006508
Trre3g03956 564 ProSiteProfiles Peptidase family A1 domain profile. 190 541 IPR033121 -
Trre3g03956 564 FunFam Aspartyl protease family protein 166 362 - -
Trre3g03956 564 SUPERFAMILY Acid proteases 182 546 IPR021109 -
Trre3g03956 564 PANTHER ASPARTYL PROTEASES 111 539 IPR001461 GO:0004190|GO:0006508
Trre3g03956 564 Gene3D Acid Proteases 164 362 IPR021109 -
Trre3g03956 564 FunFam Aspartyl protease APCB1 367 551 - -
Trre3g03956 564 Gene3D Acid Proteases 368 547 IPR021109 -
Trre3g03956 564 Pfam Xylanase inhibitor N-terminal 190 362 IPR032861 -
Trre3g03956 564 MobiDBLite consensus disorder prediction 40 65 - -
Trre3g03956 564 Pfam Xylanase inhibitor C-terminal 401 541 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03956 Trre-Chr3 50691308 50695644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03956 173 545 Miscellaneous Gene Families AT1G77480 45.646 6.97e-109 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03956 - - cam:101497154 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03956 3 50691308 50695644 Trre3g03956 3 50691308 50695644 ECH