Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03950 ATGATGGCATCTTCACAAAGAGTACCAAAATTAGGATCCTTCCGTCACAGTTTCTTGGAAAGAAAAGAGAAACTGTTATCAATGAAAGGTGGCGGTGGTGGCGGTTATTCTCAAATCGGAATACCGTTATTAGAATCCGACGATGAAGATTTCTTTACTGGAAAATGGAAAAGAAAGTGTTGTTCATTTAGGGGTTTTTCTGATTGGATCGTGGAGTTTATGAAGAAAGTGAAGCGCGTGGCTATTAGAGCGTGGGATATGGGTCATTCTGATCCAAGGAAGATTATTTTTTCTGCTAAAATGGGTGTTGCTTTGATTATTATGTCTTTGTTGATTTTTCTTAAGCAACCGTTTCCAGATATTGGTAGATATTCTGTTTGGGCTATTCTTACTGTTGTCGTCGTCTTCGAATTCAGTATAGGAGCAACACTAAGCAAAGGTCTTAACAGAGGATTAGGAACTTTATCAGCTGGAGGACTTGCTTTAGCATTCGGAATGCTATCAAAATTAGCTGGAGAATGGGAAGAAATTGTAATAATGGTTAGCATCTTCATCGCAGGTTTTCTCACAATTGAATTAAGATATATTATTTGA 594 0.3754 MMASSQRVPKLGSFRHSFLERKEKLLSMKGGGGGGYSQIGIPLLESDDEDFFTGKWKRKCCSFRGFSDWIVEFMKKVKRVAIRAWDMGHSDPRKIIFSAKMGVALIIMSLLIFLKQPFPDIGRYSVWAILTVVVVFEFSIGATLSKGLNRGLGTLSAGGLALAFGMLSKLAGEWEEIVIMVSIFIAGFLTIELRYII 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03950 197 Pfam Aluminium activated malate transporter 85 190 IPR020966 GO:0015743
Trre3g03950 197 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 69 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03950 Trre-Chr3 50645152 50647087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03950 10 194 Miscellaneous Gene Families AT3G18440 55.026 2.45e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03950 K25841 - gmx:100810157 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03950 3 50645152 50647087 Trre3g03950 3 50645152 50647087 ECH
Trre7g05794 7 62866342 62869241 Trre3g03950 3 50645152 50647087 PCT