Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03938 ATGGTGCGTCGCAAACGGGAAAATCTCCCACCGGAAAGTTCAAGCTGTAATTATCAGTCAAAGCGAAGAAAACATTCTCGGTTCGAATATTCCCGCTCTAATAATAACGAATTATCTTCTTCTAGAAAATGGGTTTTCTCTTCCGAAGATTGTTCTCACTGCAAAGATACGATTGTAGTTGTTTCATACAATATCCTTGGTGTTGAAAATGCATCAAATCATTTGGATTTGTATTCTAATATCCCACGACGCTTCTTGGATTGGGGTAGACGTAAGAGGCTTATACTTGAAGAGGTCAGTAGCTATAATGCAAGCATACTCTGTTTCCAGGAGGTTGATCATTTTGATGATTTGGATGATCTTTTTCAGAAAAATGGCTTTAAAAGTGTTTACAAGCCTCGCACAGGAGAAGCAAATGATGGATGTGCTATATTTTGGAAAGACAAATTATTCAATCTTTTGCATCACGAAGATTTAGAGTTCCAGAAATTTGGTATGCGTAATAATGTCGCTCAGCTTTGTGTTTTGGAGGTAAACAATGATAATCCAGAATCTGACACATGTAAACTAACAACAGAGGAACAATCAACCACAAACAAAAGATTTGTAATAGGAAATATACACGTGCTGTTTAACCCTAACCGTGGTGACATCAAACTTGGCCAGGTCAGACTTTTAATTGACAATGCTTACAAGTTATCAAAAAAATGGGGCAATATTCCTGTTATTTTAGCAGGGGATTTGAACAGTGTTCCACAGAGTGCAATATATAAATTTCTGTCTTCATCCAAGTTAGACATTCAATTACATGATCGGAGAAATATGTCAGGACAACTTGAAATCCGTCCCAATAACAGAGTATTCCAATCGAAGTTTGGCGATGATGCTAGCATTTCAATGTCTGTTTCAAGGCAACTGCTACACAAATGGAGTGCGGAAGAACTAATCCTTGCAACTGGGGCAAAAGGAGTCACTCGTCTTCAGCACCAACTCAAGCTCCACAGTGCTTATAGTGGCGTTCCTGGAAAGCATAGAACAAGAGATGATATTGGGGAGCCCTTGGCAACATCATACCATTCTAAGTTCATGGGAACTGTTGATTATATCTGGCATTCCGAGGAACTTATCCCGATCAGAGTTCTTGAAACCTTGCCCGTTGATGTTCTTAGAAGAACTAGAGGACTCCCTAACGAGAAATGGGGAAGTGATCACCTCGCCGTTGTATGTGAATTGGCCTTTGCAAAACGTGATGAAAGTTCTGATTCTTGTGATCTTCCCTAG 1281 0.3958 MVRRKRENLPPESSSCNYQSKRRKHSRFEYSRSNNNELSSSRKWVFSSEDCSHCKDTIVVVSYNILGVENASNHLDLYSNIPRRFLDWGRRKRLILEEVSSYNASILCFQEVDHFDDLDDLFQKNGFKSVYKPRTGEANDGCAIFWKDKLFNLLHHEDLEFQKFGMRNNVAQLCVLEVNNDNPESDTCKLTTEEQSTTNKRFVIGNIHVLFNPNRGDIKLGQVRLLIDNAYKLSKKWGNIPVILAGDLNSVPQSAIYKFLSSSKLDIQLHDRRNMSGQLEIRPNNRVFQSKFGDDASISMSVSRQLLHKWSAEELILATGAKGVTRLQHQLKLHSAYSGVPGKHRTRDDIGEPLATSYHSKFMGTVDYIWHSEELIPIRVLETLPVDVLRRTRGLPNEKWGSDHLAVVCELAFAKRDESSDSCDLP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03938 426 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 14 413 - -
Trre3g03938 426 Gene3D Endonuclease/exonuclease/phosphatase 31 423 IPR036691 -
Trre3g03938 426 Pfam Endonuclease/Exonuclease/phosphatase family 61 404 IPR005135 GO:0003824
Trre3g03938 426 SUPERFAMILY DNase I-like 56 412 IPR036691 -
Trre3g03938 426 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03938 Trre-Chr3 50452733 50458180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03938 88 262 EF-hand Containing Proteins AT5G54130 26.630 1.42e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03938 - - gmx:100777474 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03938 3 50452733 50458180 Trre3g03938 3 50452733 50458180 ECH