Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03918 ATGGCACTCACAAACAACAACATTAAACTATTATCATCATCAGAATTTCCATTCAACAATTCATCATCATTCTCACTCATCACTCTTTCTCGCTCCTCATTCAATCTCTTTCTCTCTCATCCCAAATCTTCATTTCCTACAATCACTTTCTCTTCTCTCAAAACAACCCATCATTCATCTTCCAACCCAACACCTCCATGGCTCACCAAAACAAACGATTCTCCCAAAAGGGTATCTGAATCTACCATCAAAGAAGAATCTTCTCAACTCCAACCTGATAAACCCAAAACCCCGGTCGAAAGAATCGTTTTTCGGTTAAGAAACTTAGGGTTAGTAGAAGATGATGAACAACAACAACAACAACAACAAGAACAAGAACAAGAAGTAGAAGAAGCTAAAGTGAGTGCATTAACTGGAGATGAAAAATTGAGTGAATTGTTGAAGAGAAAATGGGTTCGTCCTGATGTTTTATTGGATGATGATGATGAAGATGAAGAGGAGAAGATAGTGGTTCCATGGAAGAGAGAGGAAGAAAGAGAAATTGGTGGTGGTGGAATTGAAGAAGAGGGGTTTAAGAAAAGGACATTAAAGGCTCCATCTTTGGCTGATTTGACACTTGAGGATGAATTGTTGAGGAGGTTAAGGAGAGAGGGTATGCGTGTTAGAGAGAGGGTTAATGTACCTAAAGCTGGACTTACACAAGAGGTTATGGAGAAGATTCATGAGAGGTGGAGGAAAGAGGAGTTAGTTAGGCTTAAGTTTCATGAGGAACTTGCTAAGAATATGAGGATTGCTCATCAGATTGTTGAGCGGCGAACAGGAGGATTGGTTACATGGAAAGCAGGAAGTGTTATGATGGTGTATCGTGGTAAAAATTACCAAGGTCCTGCTTCTCCGAAGGAACTCGATGTAGAGGAAAGTGATGGATTTTTTGTGCCAGAGGTCTCATCAGGAAGTTTGTCAAAAACAAAAGAAACTGATGCAACCACATCCCTCGAAAATATTGAGTCAGTTAGGAGGAACAACAAACCACCAGAGAACTTGACAGAAGAGGAAATAGAGTACAATGCGCTGCTTGATGGTTTAGGTCCTCGATTTGTTGAATGGTGGGGTACAGGAATACCTCCTGTTGATGCTGATTTACTTCCGCGTGTCGTTCCTGGTTATAAAACACCTTATAGGCTTCTACCTATTGGAATGCGTTCTCGACTAACAAGTGCAGAGTTGACCGATTTGAGGAAAATTGCAAAGTCGCTTCCTTCTCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGCCTAGCATGCGCTATTCTTAAGCTTTGGGAGAAGAGTTTAATTGCAAAGATTGCTGTTAAACCCGGTATCCAGAACACAAACAATAAACTAATGGCCGATGAGCTTAGTACATTAACAGGAGGCACCTTGCTGCTAAGGAATAAATTTTACATTGTTATATACCGTGGGAAGGACTTTGTTCCAACTAGTGTGGCTGCAGTTTTGGCTGAAAGACAGGAATTGACAAAACAAGTACAGGATGTCGAAGAGAAGGTGCGGTGCAAAGCTGTTGTTGCAACTCCATCTGGACAAGGTGAAGCAACAGCACCGGCAGGATCTTTAGCAGAGTTCTATGAGGCCCAGGCTCGTTGGGGAAGGGACGTATCTACCGAAGAACATGAGAGGATGATAGAAGAAGCTACCAAAGCCAAGAATCTTAAACTTGTCAAACAAATTGAACACAAACTCTCTCTTGCCGGGACGAAAAAGCTTCGAGCAGAAAAGCTGTTAGCTAAAATAGAATCATCCATGGTTCCAGCTGGTCCTGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTTGTGTTCCGTAGGATTGGTTTAAGAATGAAACCATACTTACCACTTGGTATACGTGGTGTTTTTGATGGTGTCATTGAGAACATGCATTTGCATTGGAAACACCGAGAACTTGTAAAATTGATAACAAAACAAAAGACTCTTGCTTTTGTCGAAGACACAGCAAGGTTACTGGAATATGAGAGTGGTGGAATACTCGTGGCAATAGAGAAAGTTTCTAAAGAATTTGCTCTTATTTATTATCGTGGAAAAAATTATAAGCGGCCCCTTACTTTAAGGCCAAGAAACCTTCTAACAAAAGCAAAGGCATTGAAGCGTTCTGTAGCCATGCAACGGCACGAGGCTCTGAGTAACCATATTACAGAATTGGAAACAACAATTGAACAAATGAAACAAGAACTTGGTCTATCCGAAGATGAGTGGAGCATGACGGAAGGGCATGAAAACCAAGATTTCGATCAAAGTGGAGATGATGAAGATTCTGATGGTTTTGATGTTGAGGAAGACACTGATTGGGATGATGACGAGGACTCTGAGTTTTCAGGACAAGACGTCGATGAGCATCCTTGA 2430 0.4123 MALTNNNIKLLSSSEFPFNNSSSFSLITLSRSSFNLFLSHPKSSFPTITFSSLKTTHHSSSNPTPPWLTKTNDSPKRVSESTIKEESSQLQPDKPKTPVERIVFRLRNLGLVEDDEQQQQQQQEQEQEVEEAKVSALTGDEKLSELLKRKWVRPDVLLDDDDEDEEEKIVVPWKREEEREIGGGGIEEEGFKKRTLKAPSLADLTLEDELLRRLRREGMRVRERVNVPKAGLTQEVMEKIHERWRKEELVRLKFHEELAKNMRIAHQIVERRTGGLVTWKAGSVMMVYRGKNYQGPASPKELDVEESDGFFVPEVSSGSLSKTKETDATTSLENIESVRRNNKPPENLTEEEIEYNALLDGLGPRFVEWWGTGIPPVDADLLPRVVPGYKTPYRLLPIGMRSRLTSAELTDLRKIAKSLPSHFALGRNRNHQGLACAILKLWEKSLIAKIAVKPGIQNTNNKLMADELSTLTGGTLLLRNKFYIVIYRGKDFVPTSVAAVLAERQELTKQVQDVEEKVRCKAVVATPSGQGEATAPAGSLAEFYEAQARWGRDVSTEEHERMIEEATKAKNLKLVKQIEHKLSLAGTKKLRAEKLLAKIESSMVPAGPDYDQETITDEERVVFRRIGLRMKPYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPLTLRPRNLLTKAKALKRSVAMQRHEALSNHITELETTIEQMKQELGLSEDEWSMTEGHENQDFDQSGDDEDSDGFDVEEDTDWDDDEDSEFSGQDVDEHP 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03918 809 FunFam CRS2-associated factor 1, chloroplastic 205 300 - -
Trre3g03918 809 FunFam CRM-domain containing factor CFM3B, chloroplastic 614 716 - -
Trre3g03918 809 Pfam CRS1 / YhbY (CRM) domain 404 488 IPR001890 GO:0003723
Trre3g03918 809 Pfam CRS1 / YhbY (CRM) domain 616 691 IPR001890 GO:0003723
Trre3g03918 809 Pfam CRS1 / YhbY (CRM) domain 207 289 IPR001890 GO:0003723
Trre3g03918 809 Gene3D - 403 496 IPR035920 -
Trre3g03918 809 Gene3D - 204 303 IPR035920 -
Trre3g03918 809 Gene3D - 614 713 IPR035920 -
Trre3g03918 809 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 48 787 IPR045278 GO:0000375|GO:0003729
Trre3g03918 809 SUPERFAMILY YhbY-like 205 297 IPR035920 -
Trre3g03918 809 MobiDBLite consensus disorder prediction 77 91 - -
Trre3g03918 809 FunFam CRS2-associated factor 1, chloroplastic 403 499 - -
Trre3g03918 809 MobiDBLite consensus disorder prediction 53 76 - -
Trre3g03918 809 SMART CRS1_YhbY_2 404 488 IPR001890 GO:0003723
Trre3g03918 809 SMART CRS1_YhbY_2 206 289 IPR001890 GO:0003723
Trre3g03918 809 SMART CRS1_YhbY_2 615 702 IPR001890 GO:0003723
Trre3g03918 809 MobiDBLite consensus disorder prediction 315 338 - -
Trre3g03918 809 MobiDBLite consensus disorder prediction 772 802 - -
Trre3g03918 809 Coils Coil 497 517 - -
Trre3g03918 809 Coils Coil 112 135 - -
Trre3g03918 809 ProSiteProfiles CRM domain profile. 204 300 IPR001890 GO:0003723
Trre3g03918 809 MobiDBLite consensus disorder prediction 760 809 - -
Trre3g03918 809 Coils Coil 733 760 - -
Trre3g03918 809 ProSiteProfiles CRM domain profile. 402 499 IPR001890 GO:0003723
Trre3g03918 809 SUPERFAMILY YhbY-like 404 495 IPR035920 -
Trre3g03918 809 SUPERFAMILY YhbY-like 614 712 IPR035920 -
Trre3g03918 809 MobiDBLite consensus disorder prediction 53 97 - -
Trre3g03918 809 MobiDBLite consensus disorder prediction 315 344 - -
Trre3g03918 809 ProSiteProfiles CRM domain profile. 613 713 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03918 Trre-Chr3 50279306 50285217 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03918 - - gmx:100788177 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03918 3 50279306 50285217 Trre3g03918 3 50279306 50285217 ECH