Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03917 ATGAGTAGAAAGAAAAGGGTATTTTCAATTGATAGTATTGAAGAGGCTGCTGTTAATTTCTTCAACTATCTTTTACAAGAGAAGCCAAAGATTCCATTTTTCATTCCATTGATTTTGATTGCTTGTGCTGTTGAGAAGTGGGTCTTCTCTTTCTCTACTTGGGTCCCTCTTGCACTTGCTGTTTGGGCTACTATACAGTATGGGAGATACCAACGCAAACTACTTGTGGAGGATTTGGATAAGAAATGGAAACGAATCATATTGAATAACTCGCCCATCACACCATTGGAGCACTGCGAATGGCTGAATAAATTGTTGACAGAAATCTGGCCCAACTATTTTAACCCCAAGCTTTCATCAAGGTTATCAGCTATAGTCGAGTCACGTTTAAAGCTCCGAAAACCGAGATTTCTTGAAAGAGTTGAGCTGCAGGAGTTTTCACTCGGATCATGCCCTCCTAGCTTGGCGTTACAAGGGATGCGATGGTCAACTATCGGCGATCAGCGAGTCATGCAACTTGGTTTTGATTGGGACACCAATGAAATGAGCATTTTAATACTTGCTAAGCTTGCGAAGCCTTTGATTGGAACTGCACGAATCGTTATTAACAGTCTTCATATCAAGGGAGATCTTATCTTTACGCCGATTCTTGATGGAAGGGCGCTTTTATACTCGTTTGTATCAGCTCCTGAGGTGAGAGTAGGAGTTGCCTTTGGAAGCGGCGGCAGTCAGTCACTTCCAGCTACCGAGTGGCCTGGTGTTTCTTCATGGCTGGAAAAGCTTTTCACTGACACCTTGGTTAAAACCATGGTGGAACCTCGACGACGATGTTTCACTTTGCCTGCTGTTGATTTAAGAAAAAAAGCGGTTGGAGGAATCATATATGTTAAAGTGATTTCGGCAAATAAACTTTCTAGGAATTCGTTCAAGGTATCTAGGAGGCAACAAAATGGATCATCCAATGGTTCTTCTGAAGACAAAGACCTACATACATTTGTAGAGGTAGAAATTGAGGAATTAACGAGGAGAACCGATGTCAGACTAGGTTCAACCCCTAGATGGGATGCACCGTTTAATATGGTTTTGCATGATAATACAGGAACTCTTCGTTTCAATCTTTATGAGTGTATTCCCAACAATGTGAAGTGTGACTATCTAGGAAGTTGTGAAATCAAGTTGAGGCATGTTGAAGATGATTCAACAATATTGTGGGCTGTAGGACCAGATTCCAGTGTTATAGCAAAGCAAGCACAATTTTGTGGAGATGAAATTGAAATGGTTGTCCCATTTGAGGGTGCTAACACTGGAGAGTTGAAGGTGAGCATTGTAGTAAAAGAGTGGCAATTTTCTGATGGAACACATAGCTTGAAGAATCTCCGAAACAACTCTCAGCCGTCACTTAACGGATCATCAAATATTCAGTTAAGAACCGGAAAGAAACTTAACATAACTGTTGTGGAAGGAAAGGATCTTGCTACTGCAAAAGAAAAATCTGGAAAATTTGACCCTTACATAAAATTGCAATATGGAAAGGTTACTCAGAAAACAAAGACTTCTCATACTGCAAATCCTGTTTGGAATCAGGCGATTGAATTCGACGAGGTTGGTGGTGGCGAATACTTAAAACTAAAAGTATTTACTGAGGAACTTTTTGGAGACGAAAACATTGGTAGTGCACAAGTAAATTTGGAAGGATTGGTTGATGGCTCAATCAGGGATGTTTGGATCCCTCTTGAAAGAGTACGTTCCGGAGAAATCAGACTTCAAATAGAAGCCGTAAAGGCGGACGACCAAGAAGGATCAATGGGTTCAGGTTCAGGAAATGGTTGGATAGAACTTGTTTTGATTGAAGGGAGAGATCTTGTTGCCGCTGATCTCAGAGGTACAAGTGATCCATATGTGAGGGTACACTATGGAAACTTCAAGAAAAGGACCAAGGTTATATATAAAACTCTAAACCCTCAATGGAACCAGACCCTAGAATTCCCTGATGATGGAAGTCCTCTAATACTATATGTGAAGGACCATAATGCGTTACTACCGACATCAAGTATAGGCGAATGTGTTGTAGAATATCAAAGGTTGCCCCCAAACCAGATGGCTGATAAGTGGATACCTCTTCGAGGTGTGAAAAGAGGTGAAATTCATATTCAAATTACTAGAAAAGTACCAGAGATGCAGAAAAGGAATAGTATAGACTCTGAACCTTCTTTGACTAAATTACACCAAATTCCTAGCCAGATAAAACAGATGATGATCAAGTTTAGGTCATTAATAGAAGATGGAAATCTTGAAGCACTTTCTACAATATTGAGCGAGTTAGAAACTCTCGAAGATACTCAAGAAGGATATGTAGCTCAGCTAGAGACCGAACAAATGCTTCTTCTCAGCAAAATCAAGGAACTTGGCCAAGAGATTATTAATTCTTCTCCTAACTTAAGCAGAAGATTTTCTGAGAGTGCCAACTGA 2469 0.4034 MSRKKRVFSIDSIEEAAVNFFNYLLQEKPKIPFFIPLILIACAVEKWVFSFSTWVPLALAVWATIQYGRYQRKLLVEDLDKKWKRIILNNSPITPLEHCEWLNKLLTEIWPNYFNPKLSSRLSAIVESRLKLRKPRFLERVELQEFSLGSCPPSLALQGMRWSTIGDQRVMQLGFDWDTNEMSILILAKLAKPLIGTARIVINSLHIKGDLIFTPILDGRALLYSFVSAPEVRVGVAFGSGGSQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRKKAVGGIIYVKVISANKLSRNSFKVSRRQQNGSSNGSSEDKDLHTFVEVEIEELTRRTDVRLGSTPRWDAPFNMVLHDNTGTLRFNLYECIPNNVKCDYLGSCEIKLRHVEDDSTILWAVGPDSSVIAKQAQFCGDEIEMVVPFEGANTGELKVSIVVKEWQFSDGTHSLKNLRNNSQPSLNGSSNIQLRTGKKLNITVVEGKDLATAKEKSGKFDPYIKLQYGKVTQKTKTSHTANPVWNQAIEFDEVGGGEYLKLKVFTEELFGDENIGSAQVNLEGLVDGSIRDVWIPLERVRSGEIRLQIEAVKADDQEGSMGSGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGNFKKRTKVIYKTLNPQWNQTLEFPDDGSPLILYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLRGVKRGEIHIQITRKVPEMQKRNSIDSEPSLTKLHQIPSQIKQMMIKFRSLIEDGNLEALSTILSELETLEDTQEGYVAQLETEQMLLLSKIKELGQEIINSSPNLSRRFSESAN 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03917 822 CDD C2 611 707 - -
Trre3g03917 822 ProSiteProfiles C2 domain profile. 461 576 IPR000008 -
Trre3g03917 822 Gene3D C2 domain 289 451 IPR035892 -
Trre3g03917 822 Coils Coil 785 805 - -
Trre3g03917 822 CDD SMP_SF 118 278 - -
Trre3g03917 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 480 591 IPR035892 -
Trre3g03917 822 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 95 281 IPR031468 GO:0008289
Trre3g03917 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 401 IPR035892 -
Trre3g03917 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 602 720 IPR035892 -
Trre3g03917 822 Gene3D C2 domain 596 722 IPR035892 -
Trre3g03917 822 Gene3D C2 domain 467 595 IPR035892 -
Trre3g03917 822 SMART C2_3c 293 405 IPR000008 -
Trre3g03917 822 SMART C2_3c 480 575 IPR000008 -
Trre3g03917 822 SMART C2_3c 610 704 IPR000008 -
Trre3g03917 822 ProSiteProfiles C2 domain profile. 582 705 IPR000008 -
Trre3g03917 822 Pfam C2 domain 293 399 IPR000008 -
Trre3g03917 822 Pfam C2 domain 480 578 IPR000008 -
Trre3g03917 822 Pfam C2 domain 611 707 IPR000008 -
Trre3g03917 822 PANTHER OS01G0128800 PROTEIN 8 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03917 Trre-Chr3 50267125 50274307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03917 329 742 Lipid Metabolism Gene Families AT3G61300 23.950 1.01e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03917 - - gmx:100807475 1411.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03917 3 50267125 50274307 Trre3g03917 3 50267125 50274307 ECH