Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03826 ATGAAAGCAGCAAACATTGCTTTTTGCACCTTCCTTTTACTGCTTCTTGTTAATGTTCAAGTGTCAATGGCAGTAACATGCAGTCCAGTACAGCTCAGCTCATGTGTGAGTGCAATCACTTCTTCAACTCCTCCATCTAGACTTTGCTGTTCCAAGATCAAAGAACAAAGACCTTGCCTTTGCCAATACCTCAAGAATCCCAATCTTAGGAAGTTTGTTAACTCTCCTAATGCCAGGAAAGTTGCTAACAATTGTGGAACTCCCTTCCCAAATTGTTGA 279 0.4122 MKAANIAFCTFLLLLLVNVQVSMAVTCSPVQLSSCVSAITSSTPPSRLCCSKIKEQRPCLCQYLKNPNLRKFVNSPNARKVANNCGTPFPNC 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03826 92 Pfam Probable lipid transfer 25 87 IPR016140 -
Trre3g03826 92 CDD nsLTP2 27 92 IPR033872 GO:0006869
Trre3g03826 92 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 7 92 IPR033872 GO:0006869
Trre3g03826 92 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 92 IPR036312 -
Trre3g03826 92 Gene3D - 25 92 IPR036312 -
Trre3g03826 92 SMART aai_6 27 92 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03826 Trre-Chr3 49349752 49350030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03826 8 92 Acyl Lipid Metabolism Gene Families AT3G18280 58.824 2.35e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03826 - - pvy:116137667 158.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03826 3 49349752 49350030 Trre3g03826 3 49349752 49350030 ECH